C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PC4 and SFRS1 interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030207 Psip1-001 ENSMUSG00000028484 10090 - 4:83455680-83486459 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030207
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030207 5.392±1.63 13.334±0.67 36.151±3.67 3.647±0.53 2.783±0.68 2.494±0.30 14.940±10.38 5.618±0.69 3.282±0.78 26.113±6.78 30.574±20.44 57.371±50.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000147 CIL_000147_0002 CGP 4:83220300-83467676
CIL_0005UX CIL_0005UX_0003 CGP 4:83417724-83486459
CIL_00051U CIL_00051U_0003 CGP 4:83455680-83864670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000395 ISS mRNA 5'-splice site recognition
GO:0001105 ISS RNA polymerase II transcription coactivator activity
GO:0003682 ISS chromatin binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005654 ISS nucleoplasm
GO:0005720 ISS nuclear heterochromatin
GO:0006351 IEA transcription, DNA-templated
GO:0006979 IDA response to oxidative stress
GO:0009408 IDA response to heat
GO:0033613 ISS activating transcription factor binding
GO:0034399 ISS nuclear periphery
GO:0035327 ISS transcriptionally active chromatin
GO:0044822 IEA poly(A) RNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0097100 ISS supercoiled DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380715 PSIP1-006 protein_coding Homo_sapiens 0 1458
ENST00000380716 PSIP1-007 protein_coding Homo_sapiens 0 1463
ENST00000380733 PSIP1-003 protein_coding Homo_sapiens 0 2457
ENST00000380738 PSIP1-004 protein_coding Homo_sapiens 0 2468
ENST00000397519 PSIP1-201 protein_coding Homo_sapiens 0 1271
ENST00000422292 RP11-54D18.4-001 processed_pseudogene Homo_sapiens 0 1088
ENST00000463712 PSIP1-010 processed_transcript Homo_sapiens 0 632
ENST00000484265 PSIP1-008 processed_transcript Homo_sapiens 0 442
ENST00000487363 PSIP1-009 processed_transcript Homo_sapiens 0 704
ENST00000488797 PSIP1-001 processed_transcript Homo_sapiens 0 460

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