C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FIP1 like 1 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029227 Fip1l1 10090 + 5:74535449-74598790 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000080164 Fip1l1-001 74535449-74598790 protein_coding
  ENSMUST00000113534 Fip1l1-007 74535524-74592430 protein_coding
  ENSMUST00000113535 Fip1l1-004 74535497-74596145 protein_coding
  ENSMUST00000113536 Fip1l1-003 74535482-74596148 protein_coding
  ENSMUST00000120618 Fip1l1-005 74535493-74596206 protein_coding
  ENSMUST00000121950 Fip1l1-008 74535548-74596206 protein_coding
  ENSMUST00000122245 Fip1l1-006 74535485-74596119 protein_coding
  ENSMUST00000125129 Fip1l1-011 74594743-74595916 retained_intron
  ENSMUST00000135377 Fip1l1-010 74535485-74540566 retained_intron
  ENSMUST00000139697 Fip1l1-009 74586803-74591990 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080164ENSMUST00000113534ENSMUST00000113535ENSMUST00000113536ENSMUST00000121950ENSMUST00000122245ENSMUST00000125129ENSMUST00000135377ENSMUST00000139697
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080164 3.664±0.47 2.747±0.97 6.029±0.16 10.895±4.42 2.778±0.66 3.692±0.73 2.302±0.37 3.360±0.47 3.892±1.42 4.353±1.30 1.465±0.59 4.893±2.66 3.444±0.65 1.392±0.00
ENSMUST00000113534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.508±0.00
ENSMUST00000113535 N/A N/A N/A 12.192±0.00 2.981±0.00 N/A 1.891±0.00 N/A 5.331±3.42 N/A 2.691±0.00 27.077±0.00 14.889±10.04 4.104±0.55
ENSMUST00000113536 5.055±0.38 N/A 4.589±0.56 10.155±0.00 2.492±0.00 N/A 2.827±1.21 2.640±0.53 5.449±2.67 3.468±0.59 3.266±0.72 9.539±4.57 10.251±3.05 4.469±1.19
ENSMUST00000121950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.279±0.00 9.135±0.00 2.833±0.24
ENSMUST00000122245 N/A 6.794±1.60 N/A N/A 4.046±0.58 5.491±0.93 N/A 3.460±0.77 3.511±0.74 3.841±0.34 N/A 8.425±3.36 7.144±0.00 N/A
ENSMUST00000125129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.815±0.00
ENSMUST00000135377 N/A 2.128±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.515±0.00
ENSMUST00000139697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.346±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082M CIL_00082M_0002 VISTA 5:73965657-74568205
CIL_0008RT CIL_0008RT_0002 VISTA 5:74061294-74663523
CIL_0007V9 CIL_0007V9_0002 VISTA 5:74131979-74735797
CIL_0001CS CIL_0001CS_0002 CGP 5:74204816-74598790
CIL_0001CL CIL_0001CL_0002 CGP 5:74535449-74702911

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005847 IDA mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 IC mRNA polyadenylation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043328 fip1l1a FIP1 like 1a (S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000070431 fip1l1b FIP1 like 1b (S. cerevisiae) protein_coding Danio_rerio
ENSG00000145216 FIP1L1 factor interacting with PAPOLA and CPSF1 protein_coding Homo_sapiens

Loading