C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FIP1 like 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113535 Fip1l1-004 ENSMUSG00000029227 10090 + 5:74535497-74596145 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000113535
Transcript ID Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000113535 12.192±0.00 2.981±0.00 1.891±0.00 5.331±3.42 2.691±0.00 27.077±0.00 14.889±10.04 4.104±0.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082M CIL_00082M_0002 VISTA 5:73965657-74568205
CIL_0008RT CIL_0008RT_0002 VISTA 5:74061294-74663523
CIL_0007V9 CIL_0007V9_0002 VISTA 5:74131979-74735797
CIL_0001CS CIL_0001CS_0002 CGP 5:74204816-74598790
CIL_0001CL CIL_0001CL_0002 CGP 5:74535449-74702911

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005847 IDA mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 IC mRNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306888 LNX1-002 protein_coding Homo_sapiens 0 287
ENST00000306932 FIP1L1-003 protein_coding Homo_sapiens 0 1929
ENST00000337488 FIP1L1-001 protein_coding Homo_sapiens 0 1081
ENST00000358575 FIP1L1-002 protein_coding Homo_sapiens 0 966
ENST00000504094 FIP1L1-010 protein_coding Homo_sapiens 0 760
ENST00000505125 FIP1L1-004 retained_intron Homo_sapiens 0 1081
ENST00000507166 FIP1L1-005 protein_coding Homo_sapiens 0 907
ENST00000507206 FIP1L1-013 retained_intron Homo_sapiens 0 283
ENST00000507922 FIP1L1-009 protein_coding Homo_sapiens 0 717
ENST00000510668 FIP1L1-015 processed_transcript Homo_sapiens 0 412
ENST00000511055 FIP1L1-014 retained_intron Homo_sapiens 0 342
ENST00000511376 FIP1L1-012 processed_transcript Homo_sapiens 0 555
ENST00000513008 FIP1L1-008 retained_intron Homo_sapiens 0 1083
ENST00000513975 FIP1L1-006 retained_intron Homo_sapiens 0 900
ENST00000514543 FIP1L1-011 nonsense_mediated_decay Homo_sapiens 0 1434

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