C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FIP1 like 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122245 Fip1l1-006 ENSMUSG00000029227 10090 + 5:74535485-74596119 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000122245
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000122245 6.794±1.60 4.046±0.58 5.491±0.93 3.460±0.77 3.511±0.74 3.841±0.34 8.425±3.36 7.144±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082M CIL_00082M_0002 VISTA 5:73965657-74568205
CIL_0008RT CIL_0008RT_0002 VISTA 5:74061294-74663523
CIL_0007V9 CIL_0007V9_0002 VISTA 5:74131979-74735797
CIL_0001CS CIL_0001CS_0002 CGP 5:74204816-74598790
CIL_0001CL CIL_0001CL_0002 CGP 5:74535449-74702911

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005847 IDA mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 IC mRNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306888 LNX1-002 protein_coding Homo_sapiens 0 272
ENST00000306932 FIP1L1-003 protein_coding Homo_sapiens 0 1997
ENST00000337488 FIP1L1-001 protein_coding Homo_sapiens 0 941
ENST00000358575 FIP1L1-002 protein_coding Homo_sapiens 0 1116
ENST00000504094 FIP1L1-010 protein_coding Homo_sapiens 0 909
ENST00000505125 FIP1L1-004 retained_intron Homo_sapiens 0 941
ENST00000507166 FIP1L1-005 protein_coding Homo_sapiens 0 717
ENST00000507206 FIP1L1-013 retained_intron Homo_sapiens 0 283
ENST00000507922 FIP1L1-009 protein_coding Homo_sapiens 0 926
ENST00000510668 FIP1L1-015 processed_transcript Homo_sapiens 0 346
ENST00000511055 FIP1L1-014 retained_intron Homo_sapiens 0 342
ENST00000511376 FIP1L1-012 processed_transcript Homo_sapiens 0 483
ENST00000513008 FIP1L1-008 retained_intron Homo_sapiens 0 942
ENST00000513975 FIP1L1-006 retained_intron Homo_sapiens 0 717
ENST00000514543 FIP1L1-011 nonsense_mediated_decay Homo_sapiens 0 1581

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