C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin, beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029580 Actb 10090 - 5:142903115-142906754 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000100497 Actb-001 142903115-142906754 protein_coding
  ENSMUST00000106216 Actb-006 142904705-142905937 protein_coding
  ENSMUST00000163829 Actb-004 142904672-142906722 protein_coding
  ENSMUST00000164765 Actb-005 142904873-142906694 retained_intron
  ENSMUST00000165629 Actb-008 142904766-142906672 retained_intron
  ENSMUST00000167386 Actb-003 142904395-142906725 processed_transcript
  ENSMUST00000167721 Actb-002 142903501-142906702 protein_coding
  ENSMUST00000171419 Actb-007 142904351-142905821 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100497ENSMUST00000106216ENSMUST00000163829ENSMUST00000167386ENSMUST00000167721ENSMUST00000171419
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100497 1834.755±169.67 1313.578±167.05 1580.135±167.17 714.058±440.70 1974.709±670.77 2838.387±215.98 316.109±38.67 811.190±63.75 660.254±174.53 2062.013±222.64 57.438±17.38 2439.984±1264.15 819.981±474.47 236.241±117.96
ENSMUST00000106216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 99.686±0.00
ENSMUST00000163829 N/A 1462.847±247.06 N/A N/A 2576.167±202.98 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.541±2.73 N/A N/A N/A
ENSMUST00000167721 N/A N/A N/A 191.982±0.00 1307.820±0.00 N/A N/A N/A N/A N/A N/A 295.809±0.00 547.188±73.79 64.232±0.00
ENSMUST00000171419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 330.528±91.59 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_0002V9 CIL_0002V9_0002 CGP 5:142866946-142906754
CIL_0002V8 CIL_0002V8_0002 CGP 5:142903115-142973185

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001895 IEA retina homeostasis
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005615 IEA extracellular space
GO:0005829 IDA cytosol
GO:0005925 IEA focal adhesion
GO:0007409 IEA axonogenesis
GO:0014069 IEA postsynaptic density
GO:0016020 IEA membrane
GO:0019894 IEA kinesin binding
GO:0019901 IEA protein kinase binding
GO:0021762 IEA substantia nigra development
GO:0030424 IEA axon
GO:0030529 IEA ribonucleoprotein complex
GO:0030863 IDA cortical cytoskeleton
GO:0030957 IEA Tat protein binding
GO:0031492 IEA nucleosomal DNA binding
GO:0035267 IEA NuA4 histone acetyltransferase complex
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex
GO:0050998 IEA nitric-oxide synthase binding
GO:0070062 IEA extracellular vesicular exosome
GO:0070527 IEA platelet aggregation
GO:0070688 IEA MLL5-L complex
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000075624 ACTB actin, beta protein_coding Homo_sapiens

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