C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106216 Actb-006 ENSMUSG00000029580 10090 - 5:142904705-142905937 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000106216
Transcript ID Testis
ENSMUST00000106216 99.686±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_0002V9 CIL_0002V9_0002 CGP 5:142866946-142906754
CIL_0002V8 CIL_0002V8_0002 CGP 5:142903115-142973185

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0030863 IDA cortical cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 529
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 527
ENSDART00000138324 actb1-004 protein_coding Danio_rerio 0 510
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 510
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 510
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 442
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 435
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 418
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 411
ENSDART00000135318 actb1-006 retained_intron Danio_rerio 0 411
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 411
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 407
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 407
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 407
ENSDART00000080664 protein_coding Danio_rerio 0 405
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 388
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 385
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 379
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 285
ENSDART00000148067 actb1-003 processed_transcript Danio_rerio 0 239
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 231
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 1e-38 163
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 477
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 636
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 534
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 542
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 558
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 438
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 438
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 558
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 420
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 547
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 558
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 403
ENST00000414620 ACTB-010 protein_coding Homo_sapiens 0 340
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 287
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 460
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 518
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 455
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 403
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 320
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 370
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 512
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 220
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 520
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 403
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 363
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 636
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 525
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 315
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 381
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 440
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 473
ENST00000450208 RP11-193H5.2-001 transcribed_processed_pseudogene Homo_sapiens 0 435
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 553
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 379
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 520
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 7e-27 124
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 462
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 346
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 636
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 636
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 324
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 363
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 542
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 0 320
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 503
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 333
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 291
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 414
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 401
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 534
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 534
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 534
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 534
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 534
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 534
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 431
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 431
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 534
ENST00000587663 ACTBP9-001 processed_pseudogene Homo_sapiens 0 459
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 534

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