C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002V9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000155034-ENSG00000075624 CGP 9606 7:5431335-5563784
GeneTranscriptPositionBiotype
ENSG00000075624 (ACTB)
actin, beta 		ENST00000331789 (ACTB-001) 5527151-5530709 protein_coding
ENST00000414620 (ACTB-010) 5529282-5562790 protein_coding
ENST00000417101 (ACTB-012) 5529235-5529982 protein_coding
ENST00000425660 (ACTB-002) 5527156-5530601 nonsense_mediated_decay
ENST00000432588 (ACTB-008) 5528592-5563784 protein_coding
ENST00000443528 (ACTB-009) 5529216-5562828 protein_coding
ENST00000462494 (ACTB-003) 5527156-5530601 retained_intron
ENST00000464611 (ACTB-013) 5527151-5528098 processed_transcript
ENST00000473257 (ACTB-011) 5528150-5530604 processed_transcript
ENST00000477812 (ACTB-007) 5528470-5530590 retained_intron
ENST00000480301 (ACTB-006) 5529067-5530583 retained_intron
ENST00000484841 (ACTB-005) 5528111-5530602 retained_intron
ENST00000493945 (ACTB-004) 5527741-5529663 retained_intron
ENSG00000155034 (FBXL18)
F-box and leucine-rich repeat protein 18 		ENST00000382368 (FBXL18-003) 5480558-5513798 protein_coding
ENST00000415009 (FBXL18-002) 5431335-5513752 nonsense_mediated_decay
ENST00000453700 (FBXL18-201) 5480451-5513768 protein_coding
ENST00000458142 (FBXL18-004) 5489178-5501919 protein_coding
ENST00000620087 (FBXL18-202) 5480582-5500996 protein_coding
ENSG00000207973 (MIR589)
microRNA 589 		ENST00000385238 (MIR589-201) 5495819-5495917 miRNA
ENSG00000228974 (AC006483.5)
 ENST00000487308 (AC006483.5-001) 5560743-5561055 processed_pseudogene
ENSG00000230733 (AC092171.4)
 ENST00000444210 (AC092171.4-001) 5475804-5479811 lincRNA
ENSG00000272719 (CTB-161C1.1)
 ENST00000609813 (CTB-161C1.1-001) 5556731-5557245 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0002V9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000066640-ENSMUSG00000029580 CGP 10090 5:142866946-142906754
GeneTranscriptPositionBiotype
ENSMUSG00000029580 (Actb)
actin, beta 		ENSMUST00000100497 (Actb-001) 142903115-142906754 protein_coding
ENSMUST00000106216 (Actb-006) 142904705-142905937 protein_coding
ENSMUST00000163829 (Actb-004) 142904672-142906722 protein_coding
ENSMUST00000164765 (Actb-005) 142904873-142906694 retained_intron
ENSMUST00000165629 (Actb-008) 142904766-142906672 retained_intron
ENSMUST00000167386 (Actb-003) 142904395-142906725 processed_transcript
ENSMUST00000167721 (Actb-002) 142903501-142906702 protein_coding
ENSMUST00000171419 (Actb-007) 142904351-142905821 protein_coding
ENSMUSG00000066640 (Fbxl18)
F-box and leucine-rich repeat protein 18 		ENSMUST00000035985 (Fbxl18-201) 142871789-142895238 protein_coding
ENSMUST00000110766 (Fbxl18-001) 142866946-142895421 protein_coding
ENSMUST00000156725 (Fbxl18-002) 142882419-142895421 retained_intron
ENSMUSG00000097559 (D430018E03Rik)
RIKEN cDNA D430018E03 gene 		ENSMUST00000181842 (D430018E03Rik-201) 142874077-142878373 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002V9_0001ENSG00000075624ENST00000331789ENST00000414620ENST00000417101ENST00000425660ENST00000432588ENST00000443528ENST00000462494ENST00000464611ENST00000473257ENST00000477812ENST00000480301ENST00000484841ENST00000493945ENSG00000155034ENST00000382368ENST00000415009ENST00000453700ENST00000458142ENST00000620087ENSG00000207973ENST00000385238ENSG00000228974ENST00000487308ENSG00000230733ENST00000444210ENSG00000272719ENST00000609813CIL_0002V9_0002ENSMUSG00000029580ENSMUST00000100497ENSMUST00000106216ENSMUST00000163829ENSMUST00000164765ENSMUST00000165629ENSMUST00000167386ENSMUST00000167721ENSMUST00000171419ENSMUSG00000066640ENSMUST00000035985ENSMUST00000110766ENSMUST00000156725ENSMUSG00000097559ENSMUST00000181842
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002V9_0001ENSG00000075624ENST00000331789ENST00000425660ENST00000462494ENST00000464611ENST00000484841ENSG00000155034ENST00000382368ENST00000415009ENST00000453700ENST00000458142ENST00000620087ENSG00000207973ENST00000385238ENSG00000228974ENST00000487308ENSG00000230733ENST00000444210ENSG00000272719ENST00000609813CIL_0002V9_0002ENSMUSG00000029580ENSMUST00000100497ENSMUST00000106216ENSMUST00000163829ENSMUST00000167386ENSMUST00000167721ENSMUST00000171419ENSMUSG00000066640ENSMUST00000035985ENSMUST00000110766ENSMUST00000156725ENSMUSG00000097559ENSMUST00000181842
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000075624 ENST00000331789 1636.060±0.00 1512.510±0.00 13.539±0.00 376.087±112.04 599.363±330.71 1059.447±713.45 152.877±123.45 284.813±196.38 464.973±67.08 1222.303±1089.61 265.266±0.00 1345.335±833.45 2236.070±366.46 445.220±116.42
ENST00000414620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425660 N/A N/A 46.065±0.00 N/A 62.947±0.00 84.810±0.00 10.236±0.00 N/A N/A 70.874±0.00 39.685±0.00 103.893±0.00 N/A N/A
ENST00000432588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462494 N/A N/A 12.127±0.00 N/A N/A N/A 6.613±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000464611 3204.210±0.00 3235.960±0.00 N/A 1686.100±0.00 2361.360±0.00 4399.980±0.00 223.468±0.00 1168.960±0.00 747.063±0.00 2389.490±0.00 251.487±0.00 2956.070±0.00 N/A 2154.970±0.00
ENST00000473257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 213.901±0.00 625.078±0.00 1302.230±0.00 148.239±0.00
ENST00000493945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000155034 ENST00000382368 0.595±0.00 0.411±0.00 0.092±0.00 1.291±0.00 N/A 0.574±0.00 0.655±0.00 1.446±0.00 0.260±0.00 N/A 0.597±0.00 0.655±0.41 1.243±0.40 0.844±0.12
ENST00000415009 0.799±0.00 1.013±0.00 N/A N/A N/A N/A N/A N/A 0.270±0.00 0.259±0.00 0.463±0.00 N/A N/A 0.309±0.00
ENST00000453700 N/A 0.583±0.00 0.148±0.00 0.698±0.00 N/A 0.665±0.00 0.021±0.00 0.250±0.00 0.191±0.01 0.459±0.00 N/A 0.069±0.00 N/A N/A
ENST00000458142 N/A N/A 0.066±0.00 N/A 0.380±0.00 0.442±0.00 N/A N/A 0.249±0.00 0.394±0.14 N/A N/A 0.175±0.03 1.357±0.00
ENST00000620087 0.405±0.00 N/A N/A 0.767±0.00 N/A 0.473±0.00 N/A N/A 0.891±0.00 0.158±0.00 N/A 0.529±0.00 N/A 0.531±0.00
ENSG00000207973 ENST00000385238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.347±0.00 N/A N/A
ENSG00000228974 ENST00000487308 N/A 0.060±0.00 N/A N/A N/A N/A N/A 0.122±0.00 N/A 0.057±0.00 N/A 0.215±0.03 N/A N/A
ENSG00000230733 ENST00000444210 0.502±0.00 1.353±0.00 0.346±0.00 1.763±1.20 1.731±1.29 1.052±0.77 0.383±0.26 2.186±0.00 0.871±0.57 0.383±0.29 0.223±0.00 1.963±1.07 1.237±0.19 1.406±0.15
ENSG00000272719 ENST00000609813 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029580 ENSMUST00000100497 1834.755±169.67 1313.578±167.05 1580.135±167.17 714.058±440.70 1974.709±670.77 2838.387±215.98 316.109±38.67 811.190±63.75 660.254±174.53 2062.013±222.64 57.438±17.38 2439.984±1264.15 819.981±474.47 236.241±117.96
ENSMUST00000106216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 99.686±0.00
ENSMUST00000163829 N/A 1462.847±247.06 N/A N/A 2576.167±202.98 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.541±2.73 N/A N/A N/A
ENSMUST00000167721 N/A N/A N/A 191.982±0.00 1307.820±0.00 N/A N/A N/A N/A N/A N/A 295.809±0.00 547.188±73.79 64.232±0.00
ENSMUST00000171419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 330.528±91.59 N/A
ENSMUSG00000066640 ENSMUST00000035985 2.472±0.48 7.301±1.50 N/A 3.636±0.08 5.201±1.14 5.909±1.12 1.299±0.34 2.013±0.27 1.043±0.38 3.488±0.72 0.973±0.21 9.009±1.72 3.248±1.04 2.707±0.46
ENSMUST00000110766 3.597±0.96 5.346±1.07 2.494±0.19 5.533±1.79 3.138±1.45 4.193±1.47 1.035±0.46 3.703±0.36 1.622±0.85 3.472±0.95 1.088±0.54 6.634±3.24 1.462±0.37 0.696±0.15
ENSMUST00000156725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00
ENSMUSG00000097559 ENSMUST00000181842 0.212±0.14 0.499±0.06 0.226±0.00 0.184±0.12 0.363±0.12 0.596±0.05 0.116±0.03 0.185±0.06 0.102±0.06 0.436±0.03 0.049±0.04 0.754±0.22 0.157±0.07 0.186±0.08

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