C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100497 Actb-001 ENSMUSG00000029580 10090 - 5:142903115-142906754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100497
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100497 1834.755±169.67 1313.578±167.05 1580.135±167.17 714.058±440.70 1974.709±670.77 2838.387±215.98 316.109±38.67 811.190±63.75 660.254±174.53 2062.013±222.64 57.438±17.38 2439.984±1264.15 819.981±474.47 236.241±117.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_0002V9 CIL_0002V9_0002 CGP 5:142866946-142906754
CIL_0002V8 CIL_0002V8_0002 CGP 5:142903115-142973185

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001895 IEA retina homeostasis
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005615 IEA extracellular space
GO:0005829 IDA cytosol
GO:0005925 IEA focal adhesion
GO:0007409 IEA axonogenesis
GO:0014069 IEA postsynaptic density
GO:0016020 IEA membrane
GO:0019894 IEA kinesin binding
GO:0019901 IEA protein kinase binding
GO:0021762 IEA substantia nigra development
GO:0030424 IEA axon
GO:0030529 IEA ribonucleoprotein complex
GO:0030863 IDA cortical cytoskeleton
GO:0030957 IEA Tat protein binding
GO:0031492 IEA nucleosomal DNA binding
GO:0035267 IEA NuA4 histone acetyltransferase complex
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex
GO:0050998 IEA nitric-oxide synthase binding
GO:0070062 IEA extracellular vesicular exosome
GO:0070527 IEA platelet aggregation
GO:0070688 IEA MLL5-L complex
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 1384
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 1380
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 1351
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 1081
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 1077
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 1064
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 1059
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 1042
ENSDART00000080664 protein_coding Danio_rerio 0 1040
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 1014
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 952
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 941
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 898
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 809
ENSDART00000138324 actb1-004 protein_coding Danio_rerio 0 795
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 769
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 680
ENSDART00000148067 actb1-003 processed_transcript Danio_rerio 0 645
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 529
ENSDART00000135318 actb1-006 retained_intron Danio_rerio 0 411
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 409
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 409
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 1013
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 1162
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1712
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1430
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1107
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 1424
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 1424
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 466
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 1083
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 1351
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 1157
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 1408
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1107
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 872
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 1424
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 917
ENST00000414620 ACTB-010 protein_coding Homo_sapiens 0 342
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 1031
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 931
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 422
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 1312
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 1122
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 1029
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 736
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 1048
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 689
ENST00000423391 ACTBL2-001 protein_coding Homo_sapiens 0 937
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 789
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 1031
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 1147
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 874
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 977
ENST00000431775 ACTG1P3-001 processed_pseudogene Homo_sapiens 0 828
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 717
ENST00000435871 ACTBP12-001 transcribed_processed_pseudogene Homo_sapiens 0 412
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 1201
ENST00000437653 RP11-809F4.2-001 processed_pseudogene Homo_sapiens 0 843
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 872
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 385
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 686
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 440
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 1286
ENST00000450208 RP11-193H5.2-001 transcribed_processed_pseudogene Homo_sapiens 0 739
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 1419
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 1131
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 1013
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 1147
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 366
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 0 652
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 715
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 346
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 1221
ENST00000486001 RP11-4K3__A.5-001 processed_pseudogene Homo_sapiens 0 499
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 1123
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 813
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 1033
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 889
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 1341
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 0 586
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 503
ENST00000558391 RP11-752G15.9-001 transcribed_processed_pseudogene Homo_sapiens 0 678
ENST00000560958 RP11-752G15.9-002 processed_transcript Homo_sapiens 0 680
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 375
ENST00000567299 CTC-543D15.1-001 processed_pseudogene Homo_sapiens 0 405
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 878
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 414
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 817
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 603
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 926
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1430
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 1005
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1430
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 813
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1432
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 821
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 1327
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 608
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1430
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 1009
ENST00000587663 ACTBP9-001 processed_pseudogene Homo_sapiens 0 1146
ENST00000594933 ACTBP12-002 processed_transcript Homo_sapiens 0 420
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1430

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