C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163829 Actb-004 ENSMUSG00000029580 10090 - 5:142904672-142906722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastENSMUST00000163829
Transcript ID Adrenal Breast
ENSMUST00000163829 1462.847±247.06 2576.167±202.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_0002V9 CIL_0002V9_0002 CGP 5:142866946-142906754
CIL_0002V8 CIL_0002V8_0002 CGP 5:142903115-142973185

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0030863 IDA cortical cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 209
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 209
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 209
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 189
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 3.9937e-43 178
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 1e-37 159
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 7e-36 154
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 7e-36 154
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 7e-36 154
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 2e-31 139
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 2e-31 139
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 281
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 213
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 224
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 4.99997e-41 172
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 7.00005e-41 172
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 213
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 1.00053e-42 178
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 213
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 224
ENST00000414620 ACTB-010 protein_coding Homo_sapiens 0 257
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 255
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 213
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 2e-40 171
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 8e-39 165
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 9e-39 165
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 6e-40 169
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 2.99878e-43 180
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 8e-34 148
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 261
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 8e-30 135
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 255
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 2.99878e-43 180
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 213
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 281
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 3e-40 169
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 230
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 209
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 257
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 255
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 2e-35 154
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 1.96182e-44 183
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 3e-36 158
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 2.99878e-43 180
ENST00000587663 ACTBP9-001 processed_pseudogene Homo_sapiens 9.99967e-42 174

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