C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153548 Smarca1-004 ENSMUSG00000031099 10090 - X:47841930-47892396 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000153548
Transcript ID Adipose Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000153548 0.080±0.02 6.410±0.00 0.487±0.00 0.025±0.00 0.082±0.05 0.048±0.02 21.414±9.87 1.130±0.11 0.486±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000W CIL_00000W_0002 CGP X:46329007-47892974
CIL_0000A1 CIL_0000A1_0002 CGP X:47809368-47965868

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003677 IEA DNA binding
GO:0005524 IEA ATP binding
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007420 IMP brain development
GO:0008152 IEA metabolic process
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:2000177 IGI regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371121 SMARCA1-005 protein_coding Homo_sapiens 0 3049
ENST00000371122 SMARCA1-004 protein_coding Homo_sapiens 0 3049
ENST00000371123 SMARCA1-006 protein_coding Homo_sapiens 0 2122
ENST00000478420 SMARCA1-003 processed_transcript Homo_sapiens 0 534
ENST00000617310 SMARCA1-007 retained_intron Homo_sapiens 0 2122

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