C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153587 Smarca1-005 ENSMUSG00000031099 10090 - X:47887141-47892941 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLungOvaryENSMUST00000153587
Transcript ID Adipose Adrenal Breast Colon Kidney Lung Ovary
ENSMUST00000153587 1.168±0.69 3.131±1.15 0.419±0.00 0.223±0.01 0.255±0.06 0.754±0.00 7.484±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000W CIL_00000W_0002 CGP X:46329007-47892974
CIL_0000A1 CIL_0000A1_0002 CGP X:47809368-47965868

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007420 IMP brain development
GO:2000177 IGI regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371121 SMARCA1-005 protein_coding Homo_sapiens 0 261
ENST00000371122 SMARCA1-004 protein_coding Homo_sapiens 0 268
ENST00000371123 SMARCA1-006 protein_coding Homo_sapiens 0 268
ENST00000478420 SMARCA1-003 processed_transcript Homo_sapiens 1e-25 121
ENST00000617310 SMARCA1-007 retained_intron Homo_sapiens 0 268

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