C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088973 Smarca1-007 ENSMUSG00000031099 10090 - X:47809633-47892552 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088973
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088973 0.166±0.13 1.767±1.77 0.200±0.07 3.624±1.42 0.452±0.22 0.166±0.02 0.151±0.04 0.059±0.03 0.451±0.33 0.235±0.03 0.227±0.08 6.681±4.16 0.925±0.64 0.593±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000W CIL_00000W_0002 CGP X:46329007-47892974
CIL_0000A1 CIL_0000A1_0002 CGP X:47809368-47965868

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0006338 ISS chromatin remodeling
GO:0006351 ISS transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007420 ISS brain development
GO:0008094 ISS DNA-dependent ATPase activity
GO:0030182 IMP neuron differentiation
GO:0031491 IEA nucleosome binding
GO:0036310 ISS annealing helicase activity
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:2000177 IGI regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371121 SMARCA1-005 protein_coding Homo_sapiens 0 2174
ENST00000371122 SMARCA1-004 protein_coding Homo_sapiens 0 2231
ENST00000371123 SMARCA1-006 protein_coding Homo_sapiens 0 4298
ENST00000478420 SMARCA1-003 processed_transcript Homo_sapiens 0 534
ENST00000617310 SMARCA1-007 retained_intron Homo_sapiens 0 3033

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