C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage stimulation factor, 3' pre-RNA subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033609 Cstf2-001 ENSMUSG00000031256 10090 + X:134059197-134086819 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033609
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033609 4.806±0.98 4.025±0.58 4.528±0.15 5.575±1.62 4.389±1.17 6.520±0.86 1.582±0.14 4.404±0.73 4.561±2.38 5.628±0.25 0.744±0.19 9.353±3.80 4.374±2.23 6.919±2.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BC CIL_0007BC_0002 CGP X:133936385-134086819
CIL_0000YO CIL_0000YO_0003 CGP X:134059187-134221956

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005847 ISS mRNA cleavage and polyadenylation specificity factor complex
GO:0006397 IEA mRNA processing
GO:0044822 IEA poly(A) RNA binding
GO:0071920 ISS cleavage body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372972 CSTF2-001 protein_coding Homo_sapiens 0 2270
ENST00000413437 CSTF2-004 protein_coding Homo_sapiens 0 931
ENST00000415585 CSTF2-201 protein_coding Homo_sapiens 0 1236
ENST00000475126 CSTF2-003 nonsense_mediated_decay Homo_sapiens 0 1003

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