C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stereocilin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129136 Strc-004 ENSMUSG00000033498 10090 - 2:121368403-121375031 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSMUST00000129136
Transcript ID Muscle
ENSMUST00000129136 0.144±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600
CIL_000680 CIL_000680_0002 CGP 2:121310561-121363737
CIL_000683 CIL_000683_0002 CGP 2:121357714-121387168
CIL_000682 CIL_000682_0002 CGP 2:121363728-121413792

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007605 ISO sensory perception of sound
GO:0032426 IDA stereocilium bundle tip
GO:0050910 IMP detection of mechanical stimulus involved in sensory perception of sound
GO:0060088 IMP auditory receptor cell stereocilium organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000428650 STRC-011 nonsense_mediated_decay Homo_sapiens 0 580
ENST00000440125 STRC-012 nonsense_mediated_decay Homo_sapiens 0 614
ENST00000450892 STRC-001 protein_coding Homo_sapiens 0 614
ENST00000455136 STRC-006 nonsense_mediated_decay Homo_sapiens 0 1194
ENST00000470279 STRC-009 retained_intron Homo_sapiens 0 381
ENST00000471703 STRC-002 retained_intron Homo_sapiens 0 494
ENST00000483250 STRC-008 retained_intron Homo_sapiens 0 340
ENST00000485556 STRC-004 retained_intron Homo_sapiens 0 580
ENST00000509801 STRCP1-001 unprocessed_pseudogene Homo_sapiens 0 604
ENST00000541030 STRC-201 protein_coding Homo_sapiens 0 614

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