C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stereocilin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149219 Strc-002 ENSMUSG00000033498 10090 - 2:121376344-121387168 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleTestisENSMUST00000149219
Transcript ID Muscle Testis
ENSMUST00000149219 0.020±0.00 0.096±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600
CIL_000680 CIL_000680_0002 CGP 2:121310561-121363737
CIL_000683 CIL_000683_0002 CGP 2:121357714-121387168
CIL_000682 CIL_000682_0002 CGP 2:121363728-121413792

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000428650 STRC-011 nonsense_mediated_decay Homo_sapiens 0 931
ENST00000432436 STRC-005 protein_coding Homo_sapiens 0 948
ENST00000450892 STRC-001 protein_coding Homo_sapiens 0 931
ENST00000509801 STRCP1-001 unprocessed_pseudogene Homo_sapiens 0 931
ENST00000541030 STRC-201 protein_coding Homo_sapiens 0 931

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