C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stereocilin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038389 Strc-001 ENSMUSG00000033498 10090 - 2:121363728-121380940 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeLiverMuscleOvaryPlacentaTestisENSMUST00000038389
Transcript ID Adipose Liver Muscle Ovary Placenta Testis
ENSMUST00000038389 0.044±0.02 0.002±0.00 0.025±0.01 0.357±0.08 0.037±0.00 0.035±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600
CIL_000680 CIL_000680_0002 CGP 2:121310561-121363737
CIL_000683 CIL_000683_0002 CGP 2:121357714-121387168
CIL_000682 CIL_000682_0002 CGP 2:121363728-121413792

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007605 ISO sensory perception of sound
GO:0032426 IDA stereocilium bundle tip
GO:0050910 IMP detection of mechanical stimulus involved in sensory perception of sound
GO:0060088 IMP auditory receptor cell stereocilium organization
GO:0060091 IDA kinocilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000428650 STRC-011 nonsense_mediated_decay Homo_sapiens 0 1297
ENST00000432436 STRC-005 protein_coding Homo_sapiens 0 1142
ENST00000440125 STRC-012 nonsense_mediated_decay Homo_sapiens 0 2089
ENST00000448437 STRC-003 retained_intron Homo_sapiens 0 843
ENST00000450892 STRC-001 protein_coding Homo_sapiens 0 4586
ENST00000455136 STRC-006 nonsense_mediated_decay Homo_sapiens 0 636
ENST00000460952 STRC-007 retained_intron Homo_sapiens 0 484
ENST00000470279 STRC-009 retained_intron Homo_sapiens 0 407
ENST00000471703 STRC-002 retained_intron Homo_sapiens 0 1537
ENST00000483250 STRC-008 retained_intron Homo_sapiens 0 416
ENST00000485556 STRC-004 retained_intron Homo_sapiens 0 1535
ENST00000509801 STRCP1-001 unprocessed_pseudogene Homo_sapiens 0 4449
ENST00000541030 STRC-201 protein_coding Homo_sapiens 0 2089

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