C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: praja ring finger 1, E3 ubiquitin protein ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034403 Pja1 10090 - X:99465734-99471273 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036354 Pja1-002 99466114-99470692 protein_coding
  ENSMUST00000113790 Pja1-004 99465738-99470687 protein_coding
  ENSMUST00000113792 Pja1-001 99465734-99471273 protein_coding
  ENSMUST00000113797 Pja1-003 99466146-99470672 protein_coding
  ENSMUST00000167246 Pja1-201 99465768-99470735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036354ENSMUST00000113790ENSMUST00000113797ENSMUST00000167246
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036354 2.756±0.25 N/A 3.809±0.64 N/A 1.078±0.00 N/A N/A 2.626±0.10 2.346±0.44 2.739±0.00 0.726±0.22 11.572±4.05 6.745±3.21 7.919±2.38
ENSMUST00000113790 5.580±1.68 23.174±4.41 4.367±0.89 20.012±1.32 7.060±3.25 9.659±1.14 1.695±0.00 5.233±1.72 6.554±3.14 6.094±1.92 N/A 30.094±8.28 5.962±1.49 N/A
ENSMUST00000113797 12.813±1.40 8.667±1.00 9.697±0.18 53.283±31.86 8.695±5.46 5.442±0.81 6.306±0.54 12.232±3.47 5.710±1.32 7.450±2.98 2.322±0.56 19.085±14.42 14.381±7.91 10.351±1.38
ENSMUST00000167246 8.747±2.18 19.885±0.96 14.232±2.36 37.867±7.05 5.144±2.52 12.516±1.56 3.712±0.77 11.182±1.75 9.395±2.67 9.547±1.35 2.464±0.77 25.301±4.59 8.075±3.79 15.070±6.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001TA CIL_0001TA_0002 CGP X:99136130-99471273
CIL_0002RH CIL_0002RH_0002 CGP X:99465734-99848790

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 IDA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030163 IDA protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022893 pja2 praja ring finger 2 protein_coding Danio_rerio
ENSG00000181191 PJA1 praja ring finger 1, E3 ubiquitin protein ligase protein_coding Homo_sapiens

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