C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 11 X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050239 Pcdh11x-201 ENSMUSG00000034755 10090 + X:120290259-120906344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000050239
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000050239 0.034±0.03 0.129±0.00 0.077±0.05 0.024±0.00 0.007±0.00 0.009±0.01 0.258±0.14 0.008±0.00 0.029±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B8 CIL_0007B8_0002 CGP X:119927196-120910619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215473 PCDH11Y-005 protein_coding Homo_sapiens 0 3201
ENST00000298274 PCDH11X-005 processed_transcript Homo_sapiens 0 3243
ENST00000333703 PCDH11Y-002 protein_coding Homo_sapiens 0 3201
ENST00000361655 PCDH11X-007 protein_coding Homo_sapiens 0 3234
ENST00000361724 PCDH11X-004 retained_intron Homo_sapiens 0 3243
ENST00000362095 PCDH11Y-003 protein_coding Homo_sapiens 0 3201
ENST00000373088 PCDH11X-003 protein_coding Homo_sapiens 0 3234
ENST00000373094 PCDH11X-001 protein_coding Homo_sapiens 0 3243
ENST00000373097 PCDH11X-002 protein_coding Homo_sapiens 0 3243
ENST00000395337 PCDH11X-201 protein_coding Homo_sapiens 0 3243
ENST00000400457 PCDH11Y-001 protein_coding Homo_sapiens 0 3201
ENST00000406881 PCDH11X-008 protein_coding Homo_sapiens 0 3234
ENST00000504220 PCDH11X-006 protein_coding Homo_sapiens 0 3234
ENST00000620615 PCDH11Y-006 processed_transcript Homo_sapiens 0 198
ENST00000621505 PCDH11Y-007 protein_coding Homo_sapiens 0 198
ENST00000622698 PCDH11Y-004 protein_coding Homo_sapiens 0 3201
ENST00000623574 PCDH11Y-201 protein_coding Homo_sapiens 0 3201
ENST00000624742 PCDH11Y-202 protein_coding Homo_sapiens 0 3201
ENST00000624977 PCDH11Y-201 protein_coding Homo_sapiens 0 3201

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