C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035297 Cops4 10090 + 5:100518309-100547803 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045993 Cops4-001 100518309-100547803 protein_coding
  ENSMUST00000123069 Cops4-004 100518472-100533391 nonsense_mediated_decay
  ENSMUST00000123492 Cops4-007 100528640-100543923 nonsense_mediated_decay
  ENSMUST00000123559 Cops4-003 100532242-100547780 retained_intron
  ENSMUST00000146476 Cops4-005 100518737-100537354 protein_coding
  ENSMUST00000147729 Cops4-002 100518443-100532095 retained_intron
  ENSMUST00000151414 Cops4-006 100518457-100537468 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045993ENSMUST00000123069ENSMUST00000123559ENSMUST00000147729ENSMUST00000151414
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045993 20.393±3.23 6.543±2.36 27.382±2.06 22.553±8.69 12.776±5.16 11.017±2.09 20.119±0.77 16.055±0.70 17.122±9.14 13.225±1.46 33.019±0.98 15.530±8.33 29.962±15.18 73.581±1.03
ENSMUST00000123069 N/A N/A N/A 35.241±0.00 N/A N/A N/A N/A N/A N/A N/A 59.398±0.00 62.806±31.96 124.356±0.00
ENSMUST00000123559 N/A 3.675±1.67 N/A N/A 3.629±1.15 3.469±0.87 N/A N/A N/A 1.913±0.00 N/A 8.873±1.87 N/A N/A
ENSMUST00000147729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.106±0.00 N/A N/A
ENSMUST00000151414 N/A 3.147±0.00 N/A N/A 8.566±0.00 N/A N/A N/A N/A N/A N/A 11.414±3.45 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0003 CGP 5:100441918-100547803
CIL_00052V CIL_00052V_0003 CGP 5:100518309-100572245

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000338 ISS protein deneddylation
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0008021 IEA synaptic vesicle
GO:0008180 IDA COP9 signalosome
GO:0010388 IEA cullin deneddylation
GO:0030054 IEA cell junction
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043732 cops4 COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) protein_coding Danio_rerio
ENSG00000138663 COPS4 COP9 signalosome subunit 4 protein_coding Homo_sapiens

Loading