C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045993 Cops4-001 ENSMUSG00000035297 10090 + 5:100518309-100547803 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045993 20.393±3.23 6.543±2.36 27.382±2.06 22.553±8.69 12.776±5.16 11.017±2.09 20.119±0.77 16.055±0.70 17.122±9.14 13.225±1.46 33.019±0.98 15.530±8.33 29.962±15.18 73.581±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0003 CGP 5:100441918-100547803
CIL_00052V CIL_00052V_0003 CGP 5:100518309-100572245

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000338 ISS protein deneddylation
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0008021 IEA synaptic vesicle
GO:0008180 IDA COP9 signalosome
GO:0010388 IEA cullin deneddylation
GO:0030054 IEA cell junction
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264389 COPS4-001 protein_coding Homo_sapiens 0 1917
ENST00000503682 COPS4-003 protein_coding Homo_sapiens 0 1170
ENST00000504274 COPS4-009 retained_intron Homo_sapiens 0 512
ENST00000506443 COPS4-006 processed_transcript Homo_sapiens 0 704
ENST00000507376 COPS4-007 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000509093 COPS4-002 protein_coding Homo_sapiens 0 1441
ENST00000509317 COPS4-011 protein_coding Homo_sapiens 0 1016
ENST00000510801 COPS4-010 processed_transcript Homo_sapiens 0 309
ENST00000511653 COPS4-004 protein_coding Homo_sapiens 0 1456
ENST00000511891 COPS4-005 retained_intron Homo_sapiens 0 429

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