C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000123492  |
Cops4-007 |
ENSMUSG00000035297 |
10090 | + |
5:100528640-100543923  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00052W | CIL_00052W_0003 | CGP | 5:100441918-100547803 |
| CIL_00052V | CIL_00052V_0003 | CGP | 5:100518309-100572245 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005515 | IPI | protein binding |
| GO:0008180 | IDA | COP9 signalosome |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000264389
|
COPS4-001 | protein_coding | Homo_sapiens | 0 | 1005 |
|
ENST00000503682
|
COPS4-003 | protein_coding | Homo_sapiens | 0 | 822 |
|
ENST00000504274
|
COPS4-009 | retained_intron | Homo_sapiens | 0 | 420 |
|
ENST00000506443
|
COPS4-006 | processed_transcript | Homo_sapiens | 0 | 357 |
|
ENST00000507376
|
COPS4-007 | nonsense_mediated_decay | Homo_sapiens | 9.94922e-44 | 180 |
|
ENST00000509093
|
COPS4-002 | protein_coding | Homo_sapiens | 0 | 1003 |
|
ENST00000509317
|
COPS4-011 | protein_coding | Homo_sapiens | 0 | 795 |
|
ENST00000510801
|
COPS4-010 | processed_transcript | Homo_sapiens | 0 | 215 |
|
ENST00000511653
|
COPS4-004 | protein_coding | Homo_sapiens | 0 | 1005 |
