C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COP9 signalosome subunit 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138663 COPS4 9606 + 4:83034447-83075818 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264389 COPS4-001 83035090-83075818 protein_coding
  ENST00000503682 COPS4-003 83035207-83075797 protein_coding
  ENST00000504274 COPS4-009 83062975-83068506 retained_intron
  ENST00000506443 COPS4-006 83035199-83057062 processed_transcript
  ENST00000507376 COPS4-007 83035201-83049959 nonsense_mediated_decay
  ENST00000509093 COPS4-002 83034447-83075789 protein_coding
  ENST00000509317 COPS4-011 83035173-83075371 protein_coding
  ENST00000510801 COPS4-010 83035174-83049984 processed_transcript
  ENST00000511653 COPS4-004 83035225-83075756 protein_coding
  ENST00000511708 COPS4-008 83035430-83049307 processed_transcript
  ENST00000511891 COPS4-005 83035171-83049515 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264389ENST00000503682ENST00000506443ENST00000509317ENST00000511653
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264389 10.278±0.00 12.470±0.00 3.218±0.00 17.240±1.08 8.751±2.55 7.273±2.32 11.272±4.59 10.189±3.91 4.245±1.26 5.803±1.30 19.789±5.34 13.420±6.03 12.553±1.92 25.230±3.30
ENST00000503682 2.321±0.00 N/A N/A 5.225±0.00 1.130±0.00 2.190±0.00 N/A N/A 3.091±0.00 N/A N/A N/A 1.798±0.00 N/A
ENST00000506443 N/A N/A 2.698±0.00 N/A 4.243±0.00 N/A N/A 3.988±0.00 7.284±0.00 5.016±0.00 N/A N/A N/A N/A
ENST00000509317 N/A N/A N/A N/A 6.914±0.00 4.116±0.00 N/A 9.973±0.00 N/A N/A N/A N/A N/A N/A
ENST00000511653 N/A N/A N/A 4.538±0.00 N/A 2.053±0.00 2.300±0.71 N/A N/A 1.569±0.12 N/A 2.403±0.00 N/A 6.134±1.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0002 CGP 4:82909973-83075818
CIL_00052V CIL_00052V_0002 CGP 4:83034447-83137075

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000338 IMP protein deneddylation
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0008021 IDA synaptic vesicle
GO:0008180 IDA COP9 signalosome
GO:0010388 IDA cullin deneddylation
GO:0030054 IDA cell junction
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043732 cops4 COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) protein_coding Danio_rerio
ENSMUSG00000035297 Cops4 COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana) protein_coding Mus_musculus

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