C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147729 Cops4-002 ENSMUSG00000035297 10090 + 5:100518443-100532095 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENSMUST00000147729
Transcript ID Ovary
ENSMUST00000147729 3.106±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0003 CGP 5:100441918-100547803
CIL_00052V CIL_00052V_0003 CGP 5:100518309-100572245

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264389 COPS4-001 protein_coding Homo_sapiens 0 562
ENST00000503682 COPS4-003 protein_coding Homo_sapiens 0 562
ENST00000506443 COPS4-006 processed_transcript Homo_sapiens 0 571
ENST00000507376 COPS4-007 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000509093 COPS4-002 protein_coding Homo_sapiens 0 562
ENST00000509317 COPS4-011 protein_coding Homo_sapiens 3e-32 143
ENST00000510801 COPS4-010 processed_transcript Homo_sapiens 0 309
ENST00000511653 COPS4-004 protein_coding Homo_sapiens 0 542
ENST00000511891 COPS4-005 retained_intron Homo_sapiens 0 412

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