C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123559 Cops4-003 ENSMUSG00000035297 10090 + 5:100532242-100547780 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungOvaryENSMUST00000123559
Transcript ID Adrenal Breast Colon Lung Ovary
ENSMUST00000123559 3.675±1.67 3.629±1.15 3.469±0.87 1.913±0.00 8.873±1.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0003 CGP 5:100441918-100547803
CIL_00052V CIL_00052V_0003 CGP 5:100518309-100572245

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264389 COPS4-001 protein_coding Homo_sapiens 0 1254
ENST00000503682 COPS4-003 protein_coding Homo_sapiens 0 649
ENST00000504274 COPS4-009 retained_intron Homo_sapiens 0 512
ENST00000509093 COPS4-002 protein_coding Homo_sapiens 0 789
ENST00000509317 COPS4-011 protein_coding Homo_sapiens 0 1013
ENST00000511653 COPS4-004 protein_coding Homo_sapiens 0 915

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