C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ domain containing RING finger 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035357 Pdzrn3 10090 - 6:101149609-101377897 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000075994 Pdzrn3-001 101149609-101377897 protein_coding
  ENSMUST00000124884 Pdzrn3-004 101156973-101355010 processed_transcript
  ENSMUST00000144505 Pdzrn3-002 101169856-101199200 retained_intron
  ENSMUST00000151175 Pdzrn3-003 101179878-101377342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075994ENSMUST00000144505
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075994 14.640±4.12 15.258±2.73 27.506±5.70 8.925±8.85 6.775±2.99 12.675±1.36 4.764±0.56 4.499±0.48 1.064±0.48 8.156±2.11 20.005±4.68 19.060±5.87 3.689±2.10 0.443±0.19
ENSMUST00000144505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.124±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005JR CIL_0005JR_0003 CGP 6:100833638-101377897
CIL_00098G CIL_00098G_0002 VISTA 6:100979930-101582506

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0007528 IMP neuromuscular junction development
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031594 IDA neuromuscular junction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073757 pdzrn3a PDZ domain containing RING finger 3a protein_coding Danio_rerio
ENSDARG00000073869 pdzrn3b PDZ domain containing RING finger 3b protein_coding Danio_rerio
ENSG00000121440 PDZRN3 PDZ domain containing ring finger 3 protein_coding Homo_sapiens

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