C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ domain containing ring finger 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121440 PDZRN3 9606 - 3:73382433-73624940 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263666 PDZRN3-001 73382433-73624940 protein_coding
  ENST00000308537 PDZRN3-002 73408058-73624840 protein_coding
  ENST00000462146 PDZRN3-005 73382899-73474632 protein_coding
  ENST00000466348 PDZRN3-010 73385698-73402503 processed_transcript
  ENST00000466780 PDZRN3-004 73383079-73561618 protein_coding
  ENST00000477434 PDZRN3-009 73391084-73404563 retained_intron
  ENST00000478209 PDZRN3-012 73384470-73388146 retained_intron
  ENST00000479530 PDZRN3-006 73383136-73433904 protein_coding
  ENST00000484487 PDZRN3-011 73387987-73401082 retained_intron
  ENST00000492909 PDZRN3-003 73384183-73569461 protein_coding
  ENST00000494559 PDZRN3-007 73382433-73400965 protein_coding
  ENST00000498048 PDZRN3-008 73391102-73556938 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263666ENST00000462146ENST00000466780ENST00000478209ENST00000479530ENST00000484487ENST00000492909ENST00000494559
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263666 3.968±0.00 5.149±0.00 0.778±0.00 1.677±0.73 7.069±6.07 6.011±3.43 11.130±6.65 4.853±0.00 7.981±0.00 4.407±0.00 5.085±0.00 13.175±12.05 4.225±1.17 3.542±2.13
ENST00000462146 N/A N/A 0.518±0.00 N/A N/A N/A 1.805±0.00 0.213±0.00 N/A N/A N/A N/A N/A N/A
ENST00000466780 N/A N/A N/A 4.303±0.15 1.588±0.00 N/A 8.613±0.00 0.218±0.00 6.676±0.00 1.716±0.00 1.097±0.00 23.009±0.00 1.635±0.11 N/A
ENST00000478209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.217±0.00 N/A N/A N/A
ENST00000479530 5.070±0.00 6.622±0.00 0.662±0.00 N/A 8.829±0.00 13.371±0.00 N/A N/A 0.074±0.00 0.570±0.00 N/A N/A N/A 5.234±0.00
ENST00000484487 N/A N/A N/A N/A N/A N/A N/A 0.707±0.00 N/A N/A N/A N/A N/A N/A
ENST00000492909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.484±0.00 N/A N/A N/A
ENST00000494559 N/A N/A N/A 2.635±0.10 N/A 8.233±0.00 N/A N/A N/A N/A 1.550±0.00 4.320±2.19 5.077±0.00 2.444±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098G CIL_00098G_0001 VISTA 3:73222646-73825117

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0007528 IEA neuromuscular junction development
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031594 IEA neuromuscular junction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073757 pdzrn3a PDZ domain containing RING finger 3a protein_coding Danio_rerio
ENSDARG00000073869 pdzrn3b PDZ domain containing RING finger 3b protein_coding Danio_rerio
ENSMUSG00000035357 Pdzrn3 PDZ domain containing RING finger 3 protein_coding Mus_musculus

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