C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing RING finger 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144505 Pdzrn3-002 ENSMUSG00000035357 10090 - 6:101169856-101199200 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000144505
Transcript ID Testis
ENSMUST00000144505 0.124±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005JR CIL_0005JR_0003 CGP 6:100833638-101377897
CIL_00098G CIL_00098G_0002 VISTA 6:100979930-101582506

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263666 PDZRN3-001 protein_coding Homo_sapiens 0 315
ENST00000298919 PDZRN4-003 protein_coding Homo_sapiens 0.00000000005 75
ENST00000402685 PDZRN4-001 protein_coding Homo_sapiens 0.00000000005 75
ENST00000462146 PDZRN3-005 protein_coding Homo_sapiens 0 313
ENST00000466780 PDZRN3-004 protein_coding Homo_sapiens 0 315
ENST00000477434 PDZRN3-009 retained_intron Homo_sapiens 0 316
ENST00000479530 PDZRN3-006 protein_coding Homo_sapiens 0 496
ENST00000492909 PDZRN3-003 protein_coding Homo_sapiens 0 318
ENST00000498048 PDZRN3-008 processed_transcript Homo_sapiens 0 316
ENST00000539469 PDZRN4-002 protein_coding Homo_sapiens 5e-20 104

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