C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing RING finger 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075994 Pdzrn3-001 ENSMUSG00000035357 10090 - 6:101149609-101377897 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075994
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075994 14.640±4.12 15.258±2.73 27.506±5.70 8.925±8.85 6.775±2.99 12.675±1.36 4.764±0.56 4.499±0.48 1.064±0.48 8.156±2.11 20.005±4.68 19.060±5.87 3.689±2.10 0.443±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005JR CIL_0005JR_0003 CGP 6:100833638-101377897
CIL_00098G CIL_00098G_0002 VISTA 6:100979930-101582506

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0007528 IMP neuromuscular junction development
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031594 IDA neuromuscular junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000114330 pdzrn3b-001 protein_coding Danio_rerio 0 424
ENST00000263666 PDZRN3-001 protein_coding Homo_sapiens 0 4292
ENST00000298919 PDZRN4-003 protein_coding Homo_sapiens 0.00000000005 75
ENST00000308537 PDZRN3-002 protein_coding Homo_sapiens 0 1325
ENST00000402685 PDZRN4-001 protein_coding Homo_sapiens 2e-20 106
ENST00000462146 PDZRN3-005 protein_coding Homo_sapiens 0 2970
ENST00000466348 PDZRN3-010 processed_transcript Homo_sapiens 0 592
ENST00000466780 PDZRN3-004 protein_coding Homo_sapiens 0 2745
ENST00000477434 PDZRN3-009 retained_intron Homo_sapiens 0 459
ENST00000478209 PDZRN3-012 retained_intron Homo_sapiens 0 785
ENST00000479530 PDZRN3-006 protein_coding Homo_sapiens 0 2686
ENST00000484487 PDZRN3-011 retained_intron Homo_sapiens 0 433
ENST00000492909 PDZRN3-003 protein_coding Homo_sapiens 0 1709
ENST00000494559 PDZRN3-007 protein_coding Homo_sapiens 0 1014
ENST00000498048 PDZRN3-008 processed_transcript Homo_sapiens 0 433
ENST00000539469 PDZRN4-002 protein_coding Homo_sapiens 0.00000000004 75

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