C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135040 Smarce1-003 ENSMUSG00000037935 10090 - 11:99219629-99230445 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverLungENSMUST00000135040
Transcript ID Adrenal Colon Liver Lung
ENSMUST00000135040 6.658±0.00 8.149±0.00 5.944±0.00 8.955±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QY CIL_0005QY_0002 CGP 11:99144196-99231017
CIL_0004QH CIL_0004QH_0002 CGP 11:99209047-99244085

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000121981 smarce1-001 protein_coding Danio_rerio 4e-31 139
ENSDART00000011319 smarce1-201 protein_coding Danio_rerio 1e-30 137
ENST00000348513 SMARCE1-001 protein_coding Homo_sapiens 0 433
ENST00000377808 SMARCE1-008 protein_coding Homo_sapiens 0 329
ENST00000398372 SMARCE1P6-001 processed_pseudogene Homo_sapiens 0 287
ENST00000400122 SMARCE1-015 protein_coding Homo_sapiens 0 329
ENST00000412207 SMARCE1P5-001 processed_pseudogene Homo_sapiens 0 272
ENST00000417747 SMARCE1P1-001 processed_pseudogene Homo_sapiens 0 294
ENST00000431889 SMARCE1-012 protein_coding Homo_sapiens 0 331
ENST00000442896 SMARCE1P2-001 processed_pseudogene Homo_sapiens 0 278
ENST00000469334 SMARCE1-003 retained_intron Homo_sapiens 0 427
ENST00000474246 SMARCE1-006 protein_coding Homo_sapiens 0 645
ENST00000476049 KRT222-001 nonsense_mediated_decay Homo_sapiens 1.4013e-45 189
ENST00000478349 SMARCE1-018 protein_coding Homo_sapiens 0 331
ENST00000481231 SMARCE1-007 nonsense_mediated_decay Homo_sapiens 0 433
ENST00000493660 SMARCE1-004 retained_intron Homo_sapiens 0 329
ENST00000523647 SMARCE1P4-001 processed_pseudogene Homo_sapiens 0 224
ENST00000553649 SMARCE1P3-001 processed_pseudogene Homo_sapiens 0 281
ENST00000577721 SMARCE1-017 protein_coding Homo_sapiens 0 329
ENST00000578044 SMARCE1-014 protein_coding Homo_sapiens 0 329
ENST00000578112 SMARCE1-011 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000578995 SMARCE1-020 retained_intron Homo_sapiens 0 333
ENST00000580419 SMARCE1-013 protein_coding Homo_sapiens 0 329
ENST00000580654 SMARCE1-016 protein_coding Homo_sapiens 0 331
ENST00000582955 SMARCE1-019 protein_coding Homo_sapiens 0 375
ENST00000583294 SMARCE1-021 retained_intron Homo_sapiens 0 213

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