C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103133 Smarce1-001 ENSMUSG00000037935 10090 - 11:99209047-99231017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103133
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103133 11.748±5.98 5.309±0.75 9.472±1.60 21.269±13.00 6.601±0.26 7.123±1.38 8.491±1.99 8.896±0.74 9.145±5.61 8.824±2.54 9.839±1.27 13.939±3.61 17.451±4.99 7.682±1.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QY CIL_0005QY_0002 CGP 11:99144196-99231017
CIL_0004QH CIL_0004QH_0002 CGP 11:99209047-99244085

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0007399 IEA nervous system development
GO:0008080 IEA N-acetyltransferase activity
GO:0008152 IEA metabolic process
GO:0016514 IDA SWI/SNF complex
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0017053 IEA transcriptional repressor complex
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0047485 IEA protein N-terminus binding
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000121981 smarce1-001 protein_coding Danio_rerio 0 649
ENSDART00000011319 smarce1-201 protein_coding Danio_rerio 0 603
ENST00000264640 SMARCE1-009 protein_coding Homo_sapiens 0 582
ENST00000348513 SMARCE1-001 protein_coding Homo_sapiens 0 2093
ENST00000377808 SMARCE1-008 protein_coding Homo_sapiens 0 1218
ENST00000398372 SMARCE1P6-001 processed_pseudogene Homo_sapiens 0 1267
ENST00000400122 SMARCE1-015 protein_coding Homo_sapiens 0 1218
ENST00000412207 SMARCE1P5-001 processed_pseudogene Homo_sapiens 0 1515
ENST00000417747 SMARCE1P1-001 processed_pseudogene Homo_sapiens 0 1195
ENST00000431889 SMARCE1-012 protein_coding Homo_sapiens 0 1762
ENST00000442896 SMARCE1P2-001 processed_pseudogene Homo_sapiens 0 1323
ENST00000447024 SMARCE1-010 protein_coding Homo_sapiens 0 503
ENST00000469334 SMARCE1-003 retained_intron Homo_sapiens 0 1267
ENST00000474246 SMARCE1-006 protein_coding Homo_sapiens 0 429
ENST00000476049 KRT222-001 nonsense_mediated_decay Homo_sapiens 0 1328
ENST00000478349 SMARCE1-018 protein_coding Homo_sapiens 0 1279
ENST00000481231 SMARCE1-007 nonsense_mediated_decay Homo_sapiens 0 536
ENST00000493660 SMARCE1-004 retained_intron Homo_sapiens 0 608
ENST00000523647 SMARCE1P4-001 processed_pseudogene Homo_sapiens 0 337
ENST00000553649 SMARCE1P3-001 processed_pseudogene Homo_sapiens 0 1421
ENST00000577721 SMARCE1-017 protein_coding Homo_sapiens 0 569
ENST00000578044 SMARCE1-014 protein_coding Homo_sapiens 0 1480
ENST00000578112 SMARCE1-011 nonsense_mediated_decay Homo_sapiens 0 1764
ENST00000578995 SMARCE1-020 retained_intron Homo_sapiens 0 599
ENST00000580419 SMARCE1-013 protein_coding Homo_sapiens 0 1480
ENST00000580654 SMARCE1-016 protein_coding Homo_sapiens 0 845
ENST00000582955 SMARCE1-019 protein_coding Homo_sapiens 0 756
ENST00000583294 SMARCE1-021 retained_intron Homo_sapiens 0 300

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