C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156160 Smarce1-006 ENSMUSG00000037935 10090 - 11:99209992-99213443 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverPlacentaENSMUST00000156160
Transcript ID Liver Placenta
ENSMUST00000156160 30.866±20.20 20.121±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QY CIL_0005QY_0002 CGP 11:99144196-99231017
CIL_0004QH CIL_0004QH_0002 CGP 11:99209047-99244085

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000348513 SMARCE1-001 protein_coding Homo_sapiens 0 547
ENST00000377808 SMARCE1-008 protein_coding Homo_sapiens 0 268
ENST00000398372 SMARCE1P6-001 processed_pseudogene Homo_sapiens 0 287
ENST00000400122 SMARCE1-015 protein_coding Homo_sapiens 0 268
ENST00000412207 SMARCE1P5-001 processed_pseudogene Homo_sapiens 0 442
ENST00000431889 SMARCE1-012 protein_coding Homo_sapiens 0 547
ENST00000469334 SMARCE1-003 retained_intron Homo_sapiens 0 547
ENST00000476049 KRT222-001 nonsense_mediated_decay Homo_sapiens 0 490
ENST00000578044 SMARCE1-014 protein_coding Homo_sapiens 0 501
ENST00000578112 SMARCE1-011 nonsense_mediated_decay Homo_sapiens 0 547
ENST00000580419 SMARCE1-013 protein_coding Homo_sapiens 0 501

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