C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128707 Smarce1-004 ENSMUSG00000037935 10090 - 11:99219709-99230413 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QY CIL_0005QY_0002 CGP 11:99144196-99231017
CIL_0004QH CIL_0004QH_0002 CGP 11:99209047-99244085

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000348513 SMARCE1-001 protein_coding Homo_sapiens 0 193
ENST00000377808 SMARCE1-008 protein_coding Homo_sapiens 0 374
ENST00000398372 SMARCE1P6-001 processed_pseudogene Homo_sapiens 7.00649e-45 185
ENST00000400122 SMARCE1-015 protein_coding Homo_sapiens 0 195
ENST00000412207 SMARCE1P5-001 processed_pseudogene Homo_sapiens 2e-35 154
ENST00000417747 SMARCE1P1-001 processed_pseudogene Homo_sapiens 2e-40 171
ENST00000431889 SMARCE1-012 protein_coding Homo_sapiens 0 193
ENST00000442896 SMARCE1P2-001 processed_pseudogene Homo_sapiens 2.94273e-44 183
ENST00000469334 SMARCE1-003 retained_intron Homo_sapiens 0 193
ENST00000474246 SMARCE1-006 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000478349 SMARCE1-018 protein_coding Homo_sapiens 0 193
ENST00000481231 SMARCE1-007 nonsense_mediated_decay Homo_sapiens 0 193
ENST00000493660 SMARCE1-004 retained_intron Homo_sapiens 0 374
ENST00000523647 SMARCE1P4-001 processed_pseudogene Homo_sapiens 1e-26 122
ENST00000577721 SMARCE1-017 protein_coding Homo_sapiens 0 274
ENST00000578044 SMARCE1-014 protein_coding Homo_sapiens 0 195
ENST00000578112 SMARCE1-011 nonsense_mediated_decay Homo_sapiens 0 193
ENST00000578995 SMARCE1-020 retained_intron Homo_sapiens 0 193
ENST00000580419 SMARCE1-013 protein_coding Homo_sapiens 0 374
ENST00000580654 SMARCE1-016 protein_coding Homo_sapiens 0 193
ENST00000582955 SMARCE1-019 protein_coding Homo_sapiens 0 193
ENST00000583294 SMARCE1-021 retained_intron Homo_sapiens 0.000000000002 77

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