C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase type 13A4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182013 Atp13a4-002 ENSMUSG00000038094 10090 - 16:29396091-29544864 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonKidneyLungOvaryTestisENSMUST00000182013
Transcript ID Adipose Colon Kidney Lung Ovary Testis
ENSMUST00000182013 0.059±0.00 0.090±0.04 0.309±0.09 0.425±0.00 0.014±0.00 0.108±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000N5 CIL_0000N5_0002 CGP 16:29231851-29544864
CIL_0000N8 CIL_0000N8_0002 CGP 16:29395853-29654884

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005388 IC calcium-transporting ATPase activity
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006200 IEA ATP catabolic process
GO:0006874 IDA cellular calcium ion homeostasis
GO:0016021 IEA integral component of membrane
GO:0070588 IC calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342695 ATP13A4-003 protein_coding Homo_sapiens 0 3009
ENST00000392443 ATP13A4-007 protein_coding Homo_sapiens 0 2418
ENST00000400270 ATP13A4-010 protein_coding Homo_sapiens 0 599
ENST00000428352 ATP13A4-001 nonsense_mediated_decay Homo_sapiens 0 1882
ENST00000437904 ATP13A4-011 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000450950 ATP13A4-004 nonsense_mediated_decay Homo_sapiens 0 3452
ENST00000474776 ATP13A4-005 retained_intron Homo_sapiens 0 231
ENST00000482964 ATP13A4-006 processed_transcript Homo_sapiens 0 303
ENST00000490925 ATP13A4-002 retained_intron Homo_sapiens 0 1964

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