C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: putative homeodomain transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118174 Phtf2-001 ENSMUSG00000039987 10090 - 5:20758663-20882124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118174
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118174 2.446±0.19 0.360±0.16 3.172±0.17 4.714±1.62 2.462±1.63 0.428±0.16 4.919±1.86 1.269±0.25 1.471±0.93 0.967±0.61 3.504±0.00 1.383±0.86 1.954±0.79 1.374±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008S6 CIL_0008S6_0002 VISTA 5:20193774-20794889
CIL_000862 CIL_000862_0002 VISTA 5:20650023-21250986

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123940 phtf2-202 protein_coding Danio_rerio 0 407
ENST00000248550 PHTF2-006 protein_coding Homo_sapiens 0 2745
ENST00000275575 PHTF2-002 protein_coding Homo_sapiens 0 2416
ENST00000307305 PHTF2-003 protein_coding Homo_sapiens 0 2974
ENST00000415251 PHTF2-004 protein_coding Homo_sapiens 0 1308
ENST00000416283 PHTF2-201 protein_coding Homo_sapiens 0 2745
ENST00000422959 PHTF2-001 protein_coding Homo_sapiens 0 2918
ENST00000424760 PHTF2-010 protein_coding Homo_sapiens 0 2161
ENST00000450574 PHTF2-005 protein_coding Homo_sapiens 0 1210
ENST00000454592 PHTF2-007 processed_transcript Homo_sapiens 0 1291
ENST00000470215 PHTF2-009 processed_transcript Homo_sapiens 0 560
ENST00000479515 PHTF2-008 retained_intron Homo_sapiens 0 874

Loading