C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006D1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000083093-ENSG00000166847 CGP 9606 16:23603160-23677455
GeneTranscriptPositionBiotype
ENSG00000083093 (PALB2)
partner and localizer of BRCA2 		ENST00000261584 (PALB2-001) 23603170-23641310 protein_coding
ENST00000561514 (PALB2-006) 23636283-23640851 protein_coding
ENST00000565038 (PALB2-004) 23624071-23637935 nonsense_mediated_decay
ENST00000566069 (PALB2-005) 23603160-23621389 protein_coding
ENST00000567003 (PALB2-003) 23636035-23641301 processed_transcript
ENST00000568219 (PALB2-002) 23603168-23641285 nonsense_mediated_decay
ENSG00000166847 (DCTN5)
dynactin 5 (p25) 		ENST00000300087 (DCTN5-001) 23641392-23677455 protein_coding
ENST00000563188 (DCTN5-006) 23641513-23665693 nonsense_mediated_decay
ENST00000563614 (DCTN5-002) 23666468-23669872 retained_intron
ENST00000563998 (DCTN5-009) 23641471-23667371 protein_coding
ENST00000566053 (DCTN5-008) 23641476-23667218 nonsense_mediated_decay
ENST00000566298 (DCTN5-004) 23642587-23665701 protein_coding
ENST00000568272 (DCTN5-003) 23641529-23651147 protein_coding
ENST00000568589 (DCTN5-005) 23641511-23666017 protein_coding
CIL_0006D1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000044702-ENSMUSG00000030868 CGP 10090 7:122107262-122149044
GeneTranscriptPositionBiotype
ENSMUSG00000030868 (Dctn5)
dynactin 5 		ENSMUST00000033156 (Dctn5-001) 122133041-122149044 protein_coding
ENSMUST00000123602 (Dctn5-002) 122133054-122149044 retained_intron
ENSMUST00000176193 (Dctn5-003) 122133072-122135134 nonsense_mediated_decay
ENSMUST00000176295 (Dctn5-004) 122143809-122148581 nonsense_mediated_decay
ENSMUSG00000044702 (Palb2)
partner and localizer of BRCA2 		ENSMUST00000063587 (Palb2-003) 122107262-122132909 protein_coding
ENSMUST00000098068 (Palb2-001) 122107262-122132946 protein_coding
ENSMUST00000106468 (Palb2-004) 122111572-122132917 protein_coding
ENSMUST00000106469 (Palb2-002) 122107262-122132844 protein_coding
ENSMUST00000130149 (Palb2-006) 122125582-122132919 protein_coding
ENSMUST00000131657 (Palb2-007) 122107267-122124445 nonsense_mediated_decay
ENSMUST00000142952 (Palb2-005) 122111572-122132888 nonsense_mediated_decay
ENSMUST00000154508 (Palb2-008) 122107265-122112040 retained_intron
ENSMUSG00000086942 (Gm15489)
predicted gene 15489 		ENSMUST00000132811 (Gm15489-001) 122139008-122159401 antisense
ENSMUSG00000089631 (Gm16326)
predicted gene 16326 		ENSMUST00000162843 (Gm16326-001) 122131092-122131505 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006D1_0001ENSG00000083093ENST00000261584ENST00000561514ENST00000565038ENST00000566069ENST00000567003ENST00000568219ENSG00000166847ENST00000300087ENST00000563188ENST00000563614ENST00000563998ENST00000566053ENST00000566298ENST00000568272ENST00000568589CIL_0006D1_0002ENSMUSG00000030868ENSMUST00000033156ENSMUST00000123602ENSMUST00000176193ENSMUST00000176295ENSMUSG00000044702ENSMUST00000063587ENSMUST00000098068ENSMUST00000106468ENSMUST00000106469ENSMUST00000130149ENSMUST00000131657ENSMUST00000142952ENSMUST00000154508ENSMUSG00000086942ENSMUST00000132811ENSMUSG00000089631ENSMUST00000162843
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006D1_0001ENSG00000083093ENST00000261584ENST00000566069ENST00000568219ENSG00000166847ENST00000300087ENST00000563614ENST00000563998ENST00000568589CIL_0006D1_0002ENSMUSG00000030868ENSMUST00000033156ENSMUST00000123602ENSMUSG00000044702ENSMUST00000063587ENSMUST00000098068ENSMUST00000106468ENSMUST00000106469ENSMUST00000130149ENSMUST00000131657ENSMUST00000142952ENSMUST00000154508ENSMUSG00000086942ENSMUST00000132811ENSMUSG00000089631ENSMUST00000162843
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000083093 ENST00000261584 0.831±0.00 0.698±0.00 N/A N/A 1.405±0.34 0.858±0.35 0.334±0.04 0.326±0.00 1.613±0.00 0.700±0.60 0.615±0.02 1.322±0.67 0.637±0.12 2.381±0.98
ENST00000561514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566069 N/A 1.698±0.00 N/A N/A N/A 0.810±0.00 N/A N/A 1.311±0.00 N/A 1.159±0.00 1.379±0.00 0.751±0.00 3.381±0.00
ENST00000567003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568219 N/A 0.567±0.00 0.220±0.00 1.436±0.00 N/A 0.367±0.00 0.614±0.00 1.337±0.00 0.650±0.00 N/A 0.605±0.00 1.072±0.44 1.414±0.00 4.339±0.00
ENSG00000166847 ENST00000300087 0.800±0.00 1.042±0.00 1.080±0.00 5.902±0.87 1.793±0.11 1.819±0.00 0.492±0.06 2.266±0.00 0.669±0.31 0.633±0.07 N/A 1.723±1.04 1.657±0.34 3.407±1.24
ENST00000563188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563614 6.500±0.00 6.801±0.00 1.475±0.00 N/A 5.036±0.42 5.442±1.21 2.650±1.10 5.734±4.68 3.163±0.29 3.735±1.18 1.842±0.70 5.124±1.39 9.482±2.85 6.335±0.00
ENST00000563998 N/A N/A 3.995±0.00 N/A N/A N/A 3.530±0.61 N/A N/A 6.695±0.00 N/A N/A 11.483±0.00 N/A
ENST00000566053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568589 N/A N/A N/A N/A N/A N/A N/A 2.554±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030868 ENSMUST00000033156 42.682±3.22 23.496±4.33 23.654±0.35 36.127±7.03 37.728±8.27 30.845±3.25 14.474±0.92 34.472±2.20 20.868±3.47 24.559±0.60 7.416±0.83 32.973±9.62 31.086±5.83 15.961±4.04
ENSMUST00000123602 5.727±1.46 6.810±1.27 6.911±1.91 8.523±1.90 8.869±1.84 9.280±1.80 2.745±0.87 2.948±0.48 4.714±2.02 10.068±1.03 0.933±0.12 10.944±3.44 4.765±0.50 1.650±0.15
ENSMUST00000176193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000044702 ENSMUST00000063587 N/A N/A N/A N/A N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000098068 N/A 0.430±0.10 0.194±0.01 1.034±0.03 0.113±0.00 0.624±0.12 0.040±0.01 0.160±0.09 1.765±1.21 N/A 0.067±0.02 0.352±0.20 1.071±0.61 0.685±0.00
ENSMUST00000106468 0.331±0.09 0.123±0.03 N/A 0.168±0.05 0.463±0.00 0.409±0.17 N/A N/A 0.405±0.00 N/A 0.053±0.00 0.366±0.16 0.485±0.20 0.368±0.10
ENSMUST00000106469 0.565±0.23 0.330±0.06 0.185±0.00 0.301±0.15 0.576±0.22 0.419±0.22 0.078±0.03 0.271±0.08 0.978±1.14 0.097±0.02 0.104±0.00 1.031±0.57 0.818±0.42 0.616±0.35
ENSMUST00000130149 N/A 0.105±0.03 N/A 0.040±0.00 0.096±0.00 N/A 0.030±0.01 N/A 0.023±0.00 0.126±0.02 0.039±0.02 0.194±0.01 N/A N/A
ENSMUST00000131657 N/A N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A 0.837±0.00 0.887±0.55 N/A
ENSMUST00000142952 0.355±0.09 N/A 0.169±0.00 N/A 0.512±0.27 0.296±0.00 N/A 0.248±0.00 0.098±0.06 0.073±0.00 0.104±0.00 0.434±0.01 0.331±0.21 N/A
ENSMUST00000154508 N/A N/A N/A 1.874±0.00 N/A N/A 0.227±0.06 N/A 0.326±0.20 N/A 0.257±0.06 N/A N/A 1.961±0.00
ENSMUSG00000086942 ENSMUST00000132811 0.153±0.08 0.084±0.02 0.155±0.01 0.213±0.06 0.133±0.06 0.115±0.03 0.047±0.02 0.101±0.03 0.305±0.21 0.108±0.04 0.084±0.06 0.192±0.06 0.159±0.05 1.085±0.75
ENSMUSG00000089631 ENSMUST00000162843 N/A 0.395±0.00 0.177±0.00 0.118±0.00 0.377±0.00 0.346±0.01 N/A 0.170±0.00 0.225±0.09 N/A 0.239±0.00 0.360±0.00 0.314±0.28 0.341±0.05

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