C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MMS22-like, DNA repair protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108222 Mms22l-001 ENSMUSG00000045751 10090 + 4:24496451-24602950 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000108222
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000108222 0.674±0.28 0.356±0.00 0.551±0.23 1.816±0.17 0.570±0.12 0.960±0.18 0.088±0.02 0.348±0.05 4.629±3.33 0.758±0.00 1.537±0.63 3.540±1.75 1.160±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MX CIL_0007MX_0004 UCNEbase 4:22803646-24698662
CIL_0008CQ CIL_0008CQ_0002 VISTA 4:23912230-24515243
CIL_0007TH CIL_0007TH_0002 VISTA 4:24128853-24730297
CIL_00096U CIL_00096U_0002 VISTA 4:24369206-24970330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0031297 ISS replication fork processing
GO:0035101 ISS FACT complex
GO:0042555 ISS MCM complex
GO:0043596 ISS nuclear replication fork

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000275053 MMS22L-001 protein_coding Homo_sapiens 0 3500
ENST00000369251 MMS22L-010 protein_coding Homo_sapiens 0 2326
ENST00000484170 MMS22L-004 processed_transcript Homo_sapiens 0 385
ENST00000496119 MMS22L-002 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000506256 MMS22L-011 processed_transcript Homo_sapiens 0 387
ENST00000508820 MMS22L-005 retained_intron Homo_sapiens 0 529
ENST00000508976 MMS22L-007 retained_intron Homo_sapiens 0 983
ENST00000509383 MMS22L-006 nonsense_mediated_decay Homo_sapiens 0 848
ENST00000510018 MMS22L-008 protein_coding Homo_sapiens 0 377
ENST00000511335 MMS22L-009 retained_intron Homo_sapiens 0.000000000000001 92

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