C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051375 Pcdh1 10090 - 18:38185915-38212053 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057185 Pcdh1-001 38196694-38209762 protein_coding
  ENSMUST00000159405 Pcdh1-005 38196743-38211970 protein_coding
  ENSMUST00000160721 Pcdh1-004 38185915-38212053 protein_coding
  ENSMUST00000161701 Pcdh1-002 38188888-38203163 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057185ENSMUST00000159405ENSMUST00000160721ENSMUST00000161701
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057185 N/A N/A 0.956±0.00 N/A N/A 7.081±1.32 N/A N/A 1.920±1.70 N/A 0.763±0.19 2.401±0.00 3.540±2.56 N/A
ENSMUST00000159405 2.620±0.51 1.100±0.20 1.963±0.67 N/A 2.181±0.54 5.103±1.06 1.297±0.16 2.462±0.38 3.060±2.43 19.237±4.48 0.904±0.22 1.206±1.05 5.900±3.35 N/A
ENSMUST00000160721 N/A 0.958±0.19 N/A N/A N/A 1.504±0.18 N/A N/A N/A 5.154±0.39 N/A 0.542±0.03 0.891±0.00 1.620±0.11
ENSMUST00000161701 1.986±0.62 2.019±0.19 1.058±0.56 3.669±2.17 1.968±0.45 4.630±0.57 0.927±0.44 3.293±0.36 2.604±2.08 11.731±1.00 0.432±0.10 0.944±0.29 3.100±0.90 1.203±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QH CIL_0006QH_0002 CGP 18:37972624-38212053
CIL_0006QI CIL_0006QI_0002 CGP 18:38185915-38262629

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0005911 TAS cell-cell junction
GO:0007156 TAS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016339 TAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036175 pcdh1b protocadherin 1b protein_coding Danio_rerio
ENSDARG00000062720 pcdh1a protocadherin 1a protein_coding Danio_rerio
ENSG00000156453 PCDH1 protocadherin 1 protein_coding Homo_sapiens

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