C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-antigen, retina and pineal gland (arrestin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077772 Sag-001 ENSMUSG00000056055 10090 + 1:87803680-87845158 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverMuscleOvaryENSMUST00000077772
Transcript ID Heart Liver Muscle Ovary
ENSMUST00000077772 0.084±0.00 0.063±0.00 0.057±0.01 0.460±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L2 CIL_0004L2_0003 CGP 1:87755870-87845158
CIL_0003RA CIL_0003RA_0002 CGP 1:87803680-87945180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0001917 IDA photoreceptor inner segment
GO:0002046 IDA opsin binding
GO:0007165 IEA signal transduction
GO:0007601 IEA visual perception
GO:0030507 ISO spectrin binding
GO:0051219 IDA phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000409110 SAG-001 protein_coding Homo_sapiens 0 1290
ENST00000412969 SAG-005 retained_intron Homo_sapiens 0 761
ENST00000447536 SAG-007 protein_coding Homo_sapiens 0 520
ENST00000453143 SAG-016 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000469222 SAG-006 retained_intron Homo_sapiens 0 680
ENST00000471884 SAG-004 retained_intron Homo_sapiens 0 531
ENST00000474206 SAG-009 processed_transcript Homo_sapiens 0 422
ENST00000476500 SAG-003 retained_intron Homo_sapiens 2e-37 163
ENST00000479450 SAG-014 processed_transcript Homo_sapiens 0.000000000002 75

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