C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glyceraldehyde-3-phosphate dehydrogenase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118875 Gapdh-001 ENSMUSG00000057666 10090 - 6:125161854-125165773 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118875
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118875 445.337±55.00 132.909±78.56 563.762±7.19 363.807±191.20 621.368±316.91 426.868±41.51 1129.521±151.10 932.247±61.78 522.220±282.40 210.800±38.41 2864.439±193.53 230.865±100.92 456.727±530.57 33.158±15.67

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 ISS microtubule cytoskeleton organization
GO:0004365 ISS glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005829 ISS cytosol
GO:0006006 IEA glucose metabolic process
GO:0006096 IEA glycolytic process
GO:0008017 ISS microtubule binding
GO:0015630 ISS microtubule cytoskeleton
GO:0016620 IEA oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0017148 IDA negative regulation of translation
GO:0019899 IPI enzyme binding
GO:0035605 ISS peptidyl-cysteine S-nitrosylase activity
GO:0035606 ISS peptidyl-cysteine S-trans-nitrosylation
GO:0050661 IEA NADP binding
GO:0050821 ISS protein stabilization
GO:0051287 IEA NAD binding
GO:0051402 ISS neuron apoptotic process
GO:0055114 IEA oxidation-reduction process
GO:0097452 IDA GAIT complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 483
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1389
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 1022
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1279
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1304
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1304
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 588
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 1013
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 953
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 1062
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 944
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 0 335
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 669
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 931
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 876
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 1149
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 977
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 780
ENST00000429913 GAPDHP29-001 processed_pseudogene Homo_sapiens 0 691
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 928
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 634
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 782
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 865
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 717
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 710
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 701
ENST00000445880 RP1-52D1.1-001 processed_pseudogene Homo_sapiens 9e-34 145
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 606
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 874
ENST00000450472 GAPDHP14-001 processed_pseudogene Homo_sapiens 0 542
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 1195
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 887
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 678
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 1022
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 1022
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 664
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 894
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 942
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 953
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 1035
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 726
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 300
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 309
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 957
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 990
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 1024
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 647
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 915
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 798
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 798
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 636
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 1153

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