C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000082223 Rpl5-001 ENSMUSG00000058558 10090 + 5:107900502-107909005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000082223
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000082223 22.902±16.46 5.601±2.22 122.274±59.51 69.782±0.00 37.206±6.34 33.982±7.28 23.530±0.90 36.423±5.89 54.462±35.02 35.945±0.00 20.893±10.96 71.130±54.96 120.578±52.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CB CIL_0007CB_0003 CGP 5:107900502-107987085

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0006364 IEA rRNA processing
GO:0006412 IEA translation
GO:0008097 IEA 5S rRNA binding
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0030529 ISO ribonucleoprotein complex
GO:0042273 IEA ribosomal large subunit biogenesis
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315741 RPL5-006 protein_coding Homo_sapiens 0 752
ENST00000370321 RPL5-001 protein_coding Homo_sapiens 0 1314
ENST00000392009 RPL5P5-001 processed_pseudogene Homo_sapiens 0 1016
ENST00000396820 RPL5P8-001 processed_pseudogene Homo_sapiens 0 453
ENST00000398869 RPL5P35-001 unprocessed_pseudogene Homo_sapiens 0 761
ENST00000425640 RPL5P6-001 processed_pseudogene Homo_sapiens 0 1035
ENST00000426545 RPL5P34-001 processed_pseudogene Homo_sapiens 0 1147
ENST00000434805 RPL5P4-001 processed_pseudogene Homo_sapiens 0 1046
ENST00000437011 RPL5P27-001 processed_pseudogene Homo_sapiens 0 741
ENST00000438138 RPL5P26-001 processed_pseudogene Homo_sapiens 0 869
ENST00000441148 RPL5P25-001 processed_pseudogene Homo_sapiens 0 891
ENST00000448118 RPL5P9-001 processed_pseudogene Homo_sapiens 0 1031
ENST00000454085 RPL5P32-001 processed_pseudogene Homo_sapiens 0 917
ENST00000457507 RP11-234N17.1-001 processed_pseudogene Homo_sapiens 0 331
ENST00000460716 RPL5P1-001 processed_pseudogene Homo_sapiens 0 1116
ENST00000461952 RPL5-004 retained_intron Homo_sapiens 0 464
ENST00000463742 RPL5P24-001 processed_pseudogene Homo_sapiens 0 1002
ENST00000465511 RPL5P30-001 processed_pseudogene Homo_sapiens 0 1077
ENST00000469685 RPL5P17-001 processed_pseudogene Homo_sapiens 0 942
ENST00000470843 RPL5-003 nonsense_mediated_decay Homo_sapiens 0 433
ENST00000477071 RPL5P12-001 processed_pseudogene Homo_sapiens 0 946
ENST00000478870 AP000797.2-001 processed_pseudogene Homo_sapiens 0 388
ENST00000482972 RPL5P29-001 processed_pseudogene Homo_sapiens 0 1014
ENST00000487833 RPL5P33-001 processed_pseudogene Homo_sapiens 0 815
ENST00000493817 RPL5P3-001 processed_pseudogene Homo_sapiens 0 1068
ENST00000496040 RPL5P23-001 processed_pseudogene Homo_sapiens 0 929
ENST00000497519 RPL5-005 retained_intron Homo_sapiens 0 529
ENST00000498068 RPL5P11-001 processed_pseudogene Homo_sapiens 0 438
ENST00000600819 RP11-369G6.2-001 processed_pseudogene Homo_sapiens 0 684

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