C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123183 Rpl5-003 ENSMUSG00000058558 10090 + 5:107900572-107904123 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000123183
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000123183 104.773±63.68 26.424±7.14 384.327±28.33 87.221±18.56 82.680±22.85 137.177±41.23 58.187±4.72 103.752±13.21 107.832±77.14 122.046±12.63 35.345±5.29 142.295±76.12 309.440±125.47 44.907±9.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CB CIL_0007CB_0003 CGP 5:107900502-107987085

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315741 RPL5-006 protein_coding Homo_sapiens 0 726
ENST00000370321 RPL5-001 protein_coding Homo_sapiens 0 773
ENST00000392009 RPL5P5-001 processed_pseudogene Homo_sapiens 0 577
ENST00000396820 RPL5P8-001 processed_pseudogene Homo_sapiens 0 368
ENST00000398869 RPL5P35-001 unprocessed_pseudogene Homo_sapiens 0 527
ENST00000425640 RPL5P6-001 processed_pseudogene Homo_sapiens 0 597
ENST00000426545 RPL5P34-001 processed_pseudogene Homo_sapiens 0 686
ENST00000437011 RPL5P27-001 processed_pseudogene Homo_sapiens 0 488
ENST00000441148 RPL5P25-001 processed_pseudogene Homo_sapiens 0 597
ENST00000448118 RPL5P9-001 processed_pseudogene Homo_sapiens 0 614
ENST00000454085 RPL5P32-001 processed_pseudogene Homo_sapiens 0 514
ENST00000460716 RPL5P1-001 processed_pseudogene Homo_sapiens 0 676
ENST00000461952 RPL5-004 retained_intron Homo_sapiens 0 464
ENST00000463742 RPL5P24-001 processed_pseudogene Homo_sapiens 0 579
ENST00000465511 RPL5P30-001 processed_pseudogene Homo_sapiens 0 649
ENST00000469685 RPL5P17-001 processed_pseudogene Homo_sapiens 0 555
ENST00000470843 RPL5-003 nonsense_mediated_decay Homo_sapiens 0 433
ENST00000477071 RPL5P12-001 processed_pseudogene Homo_sapiens 0 627
ENST00000482972 RPL5P29-001 processed_pseudogene Homo_sapiens 0 616
ENST00000487833 RPL5P33-001 processed_pseudogene Homo_sapiens 0 490
ENST00000493817 RPL5P3-001 processed_pseudogene Homo_sapiens 0 632
ENST00000496040 RPL5P23-001 processed_pseudogene Homo_sapiens 0 582
ENST00000498068 RPL5P11-001 processed_pseudogene Homo_sapiens 0 412

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