C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153590 Rpl5-002 ENSMUSG00000058558 10090 + 5:107900874-107904828 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000153590
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153590 52.483±20.10 27.711±10.18 79.422±17.09 76.611±58.98 55.842±18.91 28.517±2.44 50.435±5.32 30.962±5.56 36.851±0.00 67.608±0.00 169.546±131.52 299.179±187.71 78.373±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CB CIL_0007CB_0003 CGP 5:107900502-107987085

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0006412 IEA translation
GO:0008097 IEA 5S rRNA binding
GO:0030529 ISO ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315741 RPL5-006 protein_coding Homo_sapiens 0 760
ENST00000370321 RPL5-001 protein_coding Homo_sapiens 0 887
ENST00000392009 RPL5P5-001 processed_pseudogene Homo_sapiens 0 701
ENST00000396820 RPL5P8-001 processed_pseudogene Homo_sapiens 0 368
ENST00000398869 RPL5P35-001 unprocessed_pseudogene Homo_sapiens 0 641
ENST00000425640 RPL5P6-001 processed_pseudogene Homo_sapiens 0 719
ENST00000426545 RPL5P34-001 processed_pseudogene Homo_sapiens 0 809
ENST00000437011 RPL5P27-001 processed_pseudogene Homo_sapiens 0 571
ENST00000441148 RPL5P25-001 processed_pseudogene Homo_sapiens 0 710
ENST00000448118 RPL5P9-001 processed_pseudogene Homo_sapiens 0 732
ENST00000454085 RPL5P32-001 processed_pseudogene Homo_sapiens 0 651
ENST00000460716 RPL5P1-001 processed_pseudogene Homo_sapiens 0 806
ENST00000461952 RPL5-004 retained_intron Homo_sapiens 0 464
ENST00000463742 RPL5P24-001 processed_pseudogene Homo_sapiens 0 701
ENST00000465511 RPL5P30-001 processed_pseudogene Homo_sapiens 0 776
ENST00000469685 RPL5P17-001 processed_pseudogene Homo_sapiens 0 676
ENST00000470843 RPL5-003 nonsense_mediated_decay Homo_sapiens 0 433
ENST00000477071 RPL5P12-001 processed_pseudogene Homo_sapiens 0 713
ENST00000482972 RPL5P29-001 processed_pseudogene Homo_sapiens 0 719
ENST00000487833 RPL5P33-001 processed_pseudogene Homo_sapiens 0 590
ENST00000493817 RPL5P3-001 processed_pseudogene Homo_sapiens 0 756
ENST00000496040 RPL5P23-001 processed_pseudogene Homo_sapiens 0 701
ENST00000498068 RPL5P11-001 processed_pseudogene Homo_sapiens 0 435

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