C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fras1 related extracellular matrix protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170248 Frem1-202 ENSMUSG00000059049 10090 - 4:82897920-83052167 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000170248
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000170248 0.153±0.11 0.117±0.02 0.597±0.03 0.637±0.00 1.484±0.68 0.188±0.00 1.054±0.12 0.135±0.05 0.586±0.09 0.032±0.00 2.302±0.99 0.438±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000943 CIL_000943_0002 VISTA 4:82615373-83218271
CIL_000149 CIL_000149_0002 CGP 4:82881751-83052339
CIL_00014A CIL_00014A_0002 CGP 4:82897920-83324255

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005604 IDA basement membrane
GO:0007154 IEA cell communication
GO:0007160 IMP cell-matrix adhesion
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380875 FREM1-005 nonsense_mediated_decay Homo_sapiens 0 3434
ENST00000380880 FREM1-001 protein_coding Homo_sapiens 0 5600
ENST00000380894 FREM1-002 protein_coding Homo_sapiens 0 1773
ENST00000422223 FREM1-201 protein_coding Homo_sapiens 0 5600

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