C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec1 family domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121330 Scfd2-003 ENSMUSG00000062110 10090 - 5:74206128-74531742 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121330
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121330 2.086±0.40 1.888±0.40 1.331±0.49 2.293±1.22 2.170±1.08 1.811±1.21 1.664±0.32 1.674±0.62 1.471±0.42 1.828±0.26 1.002±0.18 1.854±0.57 2.140±0.71 1.306±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082M CIL_00082M_0002 VISTA 5:73965657-74568205
CIL_0008RT CIL_0008RT_0002 VISTA 5:74061294-74663523
CIL_0007V9 CIL_0007V9_0002 VISTA 5:74131979-74735797
CIL_0001CR CIL_0001CR_0002 CGP 5:74195288-74531747
CIL_0001CS CIL_0001CS_0002 CGP 5:74204816-74598790

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000388940 SCFD2-002 protein_coding Homo_sapiens 0 1949
ENST00000401642 SCFD2-001 protein_coding Homo_sapiens 0 1666
ENST00000503450 SCFD2-003 protein_coding Homo_sapiens 0 453
ENST00000611795 SCFD2-201 protein_coding Homo_sapiens 0 1367

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