C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec1 family domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075848 Scfd2-005 ENSMUSG00000062110 10090 - 5:74447780-74531747 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryENSMUST00000075848
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary
ENSMUST00000075848 1.267±0.11 2.104±0.46 1.445±0.32 1.513±0.36 0.429±0.00 0.801±0.31 0.617±0.07 0.970±0.29 1.945±1.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082M CIL_00082M_0002 VISTA 5:73965657-74568205
CIL_0008RT CIL_0008RT_0002 VISTA 5:74061294-74663523
CIL_0007V9 CIL_0007V9_0002 VISTA 5:74131979-74735797
CIL_0001CR CIL_0001CR_0002 CGP 5:74195288-74531747
CIL_0001CS CIL_0001CS_0002 CGP 5:74204816-74598790

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0008150 ND biological_process
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000388940 SCFD2-002 protein_coding Homo_sapiens 0 1360
ENST00000401642 SCFD2-001 protein_coding Homo_sapiens 0 1360
ENST00000503450 SCFD2-003 protein_coding Homo_sapiens 0 453
ENST00000611795 SCFD2-201 protein_coding Homo_sapiens 0 1358

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