C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec1 family domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072857 Scfd2-001 ENSMUSG00000062110 10090 - 5:74204816-74531742 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072857 1.296±0.36 2.191±0.11 1.378±0.18 1.683±0.15 1.364±0.70 1.256±0.34 1.075±0.27 1.037±0.37 1.401±0.13 0.809±0.24 1.421±0.62 0.782±0.27 1.187±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082M CIL_00082M_0002 VISTA 5:73965657-74568205
CIL_0008RT CIL_0008RT_0002 VISTA 5:74061294-74663523
CIL_0007V9 CIL_0007V9_0002 VISTA 5:74131979-74735797
CIL_0001CR CIL_0001CR_0002 CGP 5:74195288-74531747
CIL_0001CS CIL_0001CS_0002 CGP 5:74204816-74598790

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0008150 ND biological_process
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000388940 SCFD2-002 protein_coding Homo_sapiens 0 1666
ENST00000401642 SCFD2-001 protein_coding Homo_sapiens 0 2109
ENST00000503450 SCFD2-003 protein_coding Homo_sapiens 0 453
ENST00000611795 SCFD2-201 protein_coding Homo_sapiens 0 1367

Loading