C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin, gamma, cytoplasmic 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000062825 Actg1 10090 - 11:120345690-120348542 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000062147 Actg1-006 120346033-120348475 protein_coding
  ENSMUST00000071555 Actg1-001 120345690-120348542 protein_coding
  ENSMUST00000089616 Actg1-009 120346382-120346977 protein_coding
  ENSMUST00000106215 Actg1-201 120345691-120348091 protein_coding
  ENSMUST00000128055 Actg1-005 120347080-120348479 protein_coding
  ENSMUST00000131103 Actg1-002 120346445-120348489 nonsense_mediated_decay
  ENSMUST00000141406 Actg1-007 120347087-120348469 retained_intron
  ENSMUST00000144868 Actg1-003 120347720-120348495 retained_intron
  ENSMUST00000156343 Actg1-004 120347259-120348485 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062147ENSMUST00000071555ENSMUST00000106215ENSMUST00000141406
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062147 N/A 187.826±33.95 N/A 100.288±0.00 N/A 235.868±22.06 N/A N/A 29.404±2.64 N/A N/A 170.318±4.45 904.865±509.57 36.328±0.00
ENSMUST00000071555 227.385±57.41 110.789±20.64 329.348±14.06 454.722±334.74 242.753±16.76 398.829±43.14 55.209±24.10 235.991±16.11 80.169±72.76 311.646±6.54 21.019±3.27 259.763±76.08 623.558±175.00 160.521±74.97
ENSMUST00000106215 N/A 50.736±10.22 N/A 72.179±0.00 190.944±0.00 91.868±0.00 17.068±0.04 50.908±5.86 30.693±4.82 N/A N/A 262.076±130.94 279.443±195.20 28.620±0.00
ENSMUST00000141406 N/A N/A N/A N/A N/A N/A 46.643±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0002 CGP 11:120232947-120348542

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001895 IEA retina homeostasis
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0015629 IDA actin cytoskeleton
GO:0016020 IEA membrane
GO:0030016 IDA myofibril
GO:0031941 IDA filamentous actin
GO:0042802 IEA identical protein binding
GO:0043034 TAS costamere
GO:0045214 IDA sarcomere organization
GO:0070062 IEA extracellular vesicular exosome
GO:0070527 IEA platelet aggregation
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037746 actb1 actin, beta 1 protein_coding Danio_rerio
ENSDARG00000037870 actb2 actin, beta 2 protein_coding Danio_rerio
ENSG00000184009 ACTG1 actin, gamma 1 protein_coding Homo_sapiens

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