C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma, cytoplasmic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128055 Actg1-005 ENSMUSG00000062825 10090 - 11:120347080-120348479 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0002 CGP 11:120232947-120348542

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 IDA structural constituent of cytoskeleton
GO:0015629 IDA actin cytoskeleton
GO:0030016 IDA myofibril
GO:0031941 IDA filamentous actin
GO:0043034 TAS costamere
GO:0045214 IDA sarcomere organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 544
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 527
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 494
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 481
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 475
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 466
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 582
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 754
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 846
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 660
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 643
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 464
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 582
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 638
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 643
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 643
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 497
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 588
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 459
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 357
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 643
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 527
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 337
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 424
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 331
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 588
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 449
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 575
ENST00000431775 ACTG1P3-001 processed_pseudogene Homo_sapiens 0 532
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 586
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 652
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 361
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 488
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 381
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 534
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 660
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 601
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 449
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 0 311
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 610
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 324
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 758
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 754
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 457
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 494
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 619
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 0 309
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 444
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 436
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 468
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 632
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 664
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 846
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 355
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 846
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 846
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 852
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 848
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 682
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 497
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 846
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 846
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 846

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