C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004YF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000266074-ENSG00000184009 CGP 9606 17:81395475-81523847
GeneTranscriptPositionBiotype
ENSG00000184009 (ACTG1)
actin, gamma 1 		ENST00000331925 (ACTG1-001) 81509971-81512874 protein_coding
ENST00000570382 (ACTG1-014) 81511519-81512799 protein_coding
ENST00000571691 (ACTG1-017) 81511238-81512763 protein_coding
ENST00000571721 (ACTG1-013) 81511498-81512778 protein_coding
ENST00000572105 (ACTG1-015) 81510745-81512781 nonsense_mediated_decay
ENST00000573283 (ACTG1-003) 81509988-81512780 protein_coding
ENST00000574671 (ACTG1-008) 81509999-81511848 retained_intron
ENST00000575087 (ACTG1-002) 81510008-81512790 protein_coding
ENST00000575659 (ACTG1-010) 81511348-81514640 protein_coding
ENST00000575842 (ACTG1-012) 81509989-81512781 protein_coding
ENST00000575994 (ACTG1-011) 81511346-81523847 protein_coding
ENST00000576209 (ACTG1-009) 81510005-81512150 retained_intron
ENST00000576214 (ACTG1-016) 81511085-81512748 retained_intron
ENST00000576544 (ACTG1-006) 81510013-81512791 nonsense_mediated_decay
ENST00000576917 (ACTG1-004) 81509992-81512780 retained_intron
ENST00000615544 (ACTG1-201) 81509973-81512755 protein_coding
ENSG00000229848 (RP13-766D20.2)
 ENST00000430912 (RP13-766D20.2-002) 81514047-81527243 antisense
ENST00000442532 (RP13-766D20.2-001) 81519040-81527776 antisense
ENSG00000266074 (BAHCC1)
BAH domain and coiled-coil containing 1 		ENST00000307745 (BAHCC1-201) 81399740-81466332 protein_coding
ENST00000578541 (BAHCC1-005) 81459391-81461192 retained_intron
ENST00000582709 (BAHCC1-006) 81462559-81463755 retained_intron
ENST00000583828 (BAHCC1-007) 81399774-81401858 processed_transcript
ENST00000584330 (BAHCC1-003) 81456158-81458361 retained_intron
ENST00000584436 (BAHCC1-001) 81395475-81466331 protein_coding
ENST00000585224 (BAHCC1-002) 81443465-81444273 processed_transcript
ENST00000625166 (BAHCC1-008) 81401090-81402979 TEC
ENSG00000266392 (MIR4740)
microRNA 4740 		ENST00000584184 (MIR4740-201) 81400716-81400778 miRNA
ENSG00000278200 (RP13-766D20.4)
 ENST00000617888 (RP13-766D20.4-001) 81480523-81481570 lincRNA
ENSG00000279692 (RP11-1055B8.1)
 ENST00000624417 (RP11-1055B8.1-001) 81395609-81397144 TEC

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0004YF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039741-ENSMUSG00000062825 CGP 10090 11:120232947-120348542
GeneTranscriptPositionBiotype
ENSMUSG00000039741 (Bahcc1)
BAH domain and coiled-coil containing 1 		ENSMUST00000044985 (Bahcc1-201) 120232947-120292296 protein_coding
ENSMUST00000118987 (Bahcc1-003) 120236699-120292282 protein_coding
ENSMUST00000122148 (Bahcc1-001) 120232947-120292282 protein_coding
ENSMUST00000142439 (Bahcc1-004) 120236445-120237284 processed_transcript
ENSMUST00000143667 (Bahcc1-002) 120289793-120292167 processed_transcript
ENSMUSG00000062825 (Actg1)
actin, gamma, cytoplasmic 1 		ENSMUST00000062147 (Actg1-006) 120346033-120348475 protein_coding
ENSMUST00000071555 (Actg1-001) 120345690-120348542 protein_coding
ENSMUST00000089616 (Actg1-009) 120346382-120346977 protein_coding
ENSMUST00000106215 (Actg1-201) 120345691-120348091 protein_coding
ENSMUST00000128055 (Actg1-005) 120347080-120348479 protein_coding
ENSMUST00000131103 (Actg1-002) 120346445-120348489 nonsense_mediated_decay
ENSMUST00000141406 (Actg1-007) 120347087-120348469 retained_intron
ENSMUST00000144868 (Actg1-003) 120347720-120348495 retained_intron
ENSMUST00000156343 (Actg1-004) 120347259-120348485 retained_intron
ENSMUSG00000085501 (Gm11772)
predicted gene 11772 		ENSMUST00000136542 (Gm11772-001) 120235234-120236122 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004YF_0001ENSG00000184009ENST00000331925ENST00000570382ENST00000571691ENST00000571721ENST00000572105ENST00000573283ENST00000574671ENST00000575087ENST00000575659ENST00000575842ENST00000575994ENST00000576209ENST00000576214ENST00000576544ENST00000576917ENST00000615544ENSG00000229848ENST00000430912ENST00000442532ENSG00000266074ENST00000307745ENST00000578541ENST00000582709ENST00000583828ENST00000584330ENST00000584436ENST00000585224ENST00000625166ENSG00000266392ENST00000584184ENSG00000278200ENST00000617888ENSG00000279692ENST00000624417CIL_0004YF_0002ENSMUSG00000039741ENSMUST00000044985ENSMUST00000118987ENSMUST00000122148ENSMUST00000142439ENSMUST00000143667ENSMUSG00000062825ENSMUST00000062147ENSMUST00000071555ENSMUST00000089616ENSMUST00000106215ENSMUST00000128055ENSMUST00000131103ENSMUST00000141406ENSMUST00000144868ENSMUST00000156343ENSMUSG00000085501ENSMUST00000136542
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004YF_0001ENSG00000184009ENST00000331925ENST00000570382ENST00000572105ENST00000574671ENST00000575087ENST00000576209ENST00000576544ENST00000615544ENSG00000229848ENST00000430912ENST00000442532ENSG00000266074ENST00000307745ENST00000578541ENST00000582709ENST00000584330ENST00000584436ENST00000625166ENSG00000266392ENST00000584184ENSG00000278200ENST00000617888ENSG00000279692ENST00000624417CIL_0004YF_0002ENSMUSG00000039741ENSMUST00000044985ENSMUST00000118987ENSMUST00000122148ENSMUST00000143667ENSMUSG00000062825ENSMUST00000062147ENSMUST00000071555ENSMUST00000106215ENSMUST00000141406ENSMUSG00000085501ENSMUST00000136542
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000184009 ENST00000331925 643.946±0.00 342.051±0.00 N/A 167.372±106.61 233.979±168.70 101.309±0.00 95.405±0.00 234.648±202.69 177.373±155.81 1181.530±0.00 145.239±0.00 1051.301±709.19 1279.870±23.11 473.968±0.00
ENST00000570382 N/A N/A 138.758±0.00 166.083±0.00 194.684±0.00 289.381±0.00 29.120±0.00 43.767±0.00 144.278±0.00 132.672±0.00 31.781±0.00 199.565±0.00 N/A N/A
ENST00000571691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572105 N/A N/A 24.879±0.00 N/A 56.397±0.00 68.762±0.00 8.822±0.00 17.322±0.00 37.771±0.00 28.351±0.00 15.803±0.00 51.754±0.00 N/A N/A
ENST00000573283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574671 N/A N/A 33.241±0.00 N/A N/A N/A N/A N/A N/A 24.499±0.00 18.416±0.00 N/A N/A N/A
ENST00000575087 N/A N/A 13.021±0.00 N/A N/A N/A N/A N/A 36.709±0.00 N/A N/A N/A N/A N/A
ENST00000575659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.242±0.00 895.136±0.00 950.837±501.54 187.119±0.00
ENST00000576214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576544 N/A N/A 24.637±0.00 55.390±0.00 N/A N/A 8.168±0.00 N/A 24.067±0.00 60.682±0.00 11.358±0.00 73.339±0.00 N/A N/A
ENST00000576917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615544 480.467±0.00 313.449±0.00 N/A 260.889±0.00 142.246±115.35 192.800±115.44 27.436±0.00 86.093±74.92 135.661±0.00 683.612±0.00 64.690±0.00 315.290±133.33 N/A 310.572±0.00
ENSG00000229848 ENST00000430912 N/A 0.209±0.00 N/A N/A N/A N/A N/A 0.045±0.00 N/A N/A N/A 0.477±0.00 0.263±0.00 N/A
ENST00000442532 0.103±0.00 0.223±0.00 N/A 0.087±0.04 0.174±0.00 0.187±0.00 0.111±0.00 0.105±0.00 N/A 0.569±0.00 N/A 0.158±0.00 0.108±0.00 0.128±0.06
ENSG00000266074 ENST00000307745 0.785±0.00 2.958±0.00 N/A 0.653±0.28 0.989±0.00 0.415±0.00 0.572±0.00 0.315±0.25 0.278±0.00 0.753±0.28 0.434±0.29 2.022±2.29 0.339±0.00 1.021±0.56
ENST00000578541 N/A N/A N/A N/A N/A N/A N/A 0.679±0.00 N/A N/A 1.454±0.00 N/A N/A N/A
ENST00000582709 N/A N/A N/A N/A N/A N/A N/A 0.915±0.00 N/A N/A N/A N/A N/A N/A
ENST00000583828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584330 N/A N/A N/A N/A N/A 1.046±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584436 N/A N/A 0.230±0.00 0.518±0.00 0.520±0.00 0.425±0.00 0.180±0.00 0.274±0.00 N/A N/A N/A 3.101±2.40 0.374±0.13 N/A
ENST00000585224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000625166 N/A N/A N/A N/A N/A 0.448±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000266392 ENST00000584184 N/A 0.840±0.00 N/A 0.922±0.00 N/A N/A N/A N/A N/A N/A 2.972±0.00 N/A N/A N/A
ENSG00000278200 ENST00000617888 N/A 0.079±0.00 N/A 0.543±0.00 0.086±0.00 N/A 0.106±0.00 0.057±0.00 N/A N/A N/A 0.173±0.14 N/A 1.247±0.84
ENSG00000279692 ENST00000624417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.881±0.13 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039741 ENSMUST00000044985 N/A N/A N/A N/A 0.089±0.00 0.549±0.00 0.110±0.00 N/A N/A N/A N/A N/A 0.539±0.00 N/A
ENSMUST00000118987 0.522±0.24 0.751±0.21 0.674±0.00 N/A 0.473±0.17 0.569±0.16 0.097±0.00 0.339±0.13 0.197±0.10 0.613±0.00 0.317±0.05 1.289±1.12 0.725±0.51 0.176±0.09
ENSMUST00000122148 0.929±0.11 1.654±0.36 0.369±0.00 3.596±2.41 0.891±0.50 0.839±0.26 0.589±0.25 0.662±0.31 0.251±0.16 1.446±0.29 0.575±0.26 1.974±0.83 0.441±0.28 0.389±0.13
ENSMUST00000142439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143667 1.614±0.00 N/A 1.148±0.00 6.865±0.00 1.467±0.00 N/A 0.832±0.00 1.400±0.00 0.712±0.10 N/A 0.749±0.00 2.968±1.35 1.392±1.00 N/A
ENSMUSG00000062825 ENSMUST00000062147 N/A 187.826±33.95 N/A 100.288±0.00 N/A 235.868±22.06 N/A N/A 29.404±2.64 N/A N/A 170.318±4.45 904.865±509.57 36.328±0.00
ENSMUST00000071555 227.385±57.41 110.789±20.64 329.348±14.06 454.722±334.74 242.753±16.76 398.829±43.14 55.209±24.10 235.991±16.11 80.169±72.76 311.646±6.54 21.019±3.27 259.763±76.08 623.558±175.00 160.521±74.97
ENSMUST00000089616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106215 N/A 50.736±10.22 N/A 72.179±0.00 190.944±0.00 91.868±0.00 17.068±0.04 50.908±5.86 30.693±4.82 N/A N/A 262.076±130.94 279.443±195.20 28.620±0.00
ENSMUST00000128055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141406 N/A N/A N/A N/A N/A N/A 46.643±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085501 ENSMUST00000136542 0.565±0.00 N/A 0.401±0.00 0.747±0.17 0.238±0.06 N/A 0.144±0.05 0.081±0.00 0.178±0.07 N/A 0.230±0.09 0.306±0.00 0.456±0.25 0.161±0.00

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