C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma, cytoplasmic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071555 Actg1-001 ENSMUSG00000062825 10090 - 11:120345690-120348542 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071555
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071555 227.385±57.41 110.789±20.64 329.348±14.06 454.722±334.74 242.753±16.76 398.829±43.14 55.209±24.10 235.991±16.11 80.169±72.76 311.646±6.54 21.019±3.27 259.763±76.08 623.558±175.00 160.521±74.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0002 CGP 11:120232947-120348542

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001895 IEA retina homeostasis
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0015629 IDA actin cytoskeleton
GO:0016020 IEA membrane
GO:0030016 IDA myofibril
GO:0031941 IDA filamentous actin
GO:0042802 IEA identical protein binding
GO:0043034 TAS costamere
GO:0045214 IDA sarcomere organization
GO:0070062 IEA extracellular vesicular exosome
GO:0070527 IEA platelet aggregation
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 1245
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 1245
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 1245
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 1013
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 985
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 963
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 963
ENSDART00000080664 protein_coding Danio_rerio 0 961
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 941
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 918
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 865
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 861
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 715
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 693
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 965
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 1064
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1415
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1982
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1040
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 1254
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 1227
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 464
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 1027
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 1203
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 1013
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 1221
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1040
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 856
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 1227
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 833
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 1092
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 952
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 357
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 1182
ENST00000417985 ACTBP1-001 processed_pseudogene Homo_sapiens 0 835
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 1011
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 878
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 580
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 1022
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 623
ENST00000423391 ACTBL2-001 protein_coding Homo_sapiens 0 911
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 743
ENST00000425123 ACTG1P4-001 processed_pseudogene Homo_sapiens 0 974
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 1092
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 974
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 832
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 839
ENST00000431775 ACTG1P3-001 processed_pseudogene Homo_sapiens 0 928
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 586
ENST00000435871 ACTBP12-001 transcribed_processed_pseudogene Homo_sapiens 0 449
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 1057
ENST00000437653 RP11-809F4.2-001 processed_pseudogene Homo_sapiens 0 743
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 856
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 368
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 601
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 381
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 1050
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 1238
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 1378
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 965
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 972
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 350
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 0 551
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 610
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 324
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 1055
ENST00000486001 RP11-4K3__A.5-001 processed_pseudogene Homo_sapiens 0 475
ENST00000491397 AMY2B-003 processed_transcript Homo_sapiens 0 1325
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 957
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 811
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 878
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 767
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 1171
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 0 322
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 444
ENST00000558391 RP11-752G15.9-001 transcribed_processed_pseudogene Homo_sapiens 0 693
ENST00000560958 RP11-752G15.9-002 processed_transcript Homo_sapiens 0 798
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 436
ENST00000567299 CTC-543D15.1-001 processed_pseudogene Homo_sapiens 0 350
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 701
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 473
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 747
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 664
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 885
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1899
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 1404
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1879
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 857
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1899
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 861
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 1720
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 564
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1716
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 1050
ENST00000587663 ACTBP9-001 processed_pseudogene Homo_sapiens 0 1007
ENST00000594933 ACTBP12-002 processed_transcript Homo_sapiens 0 767
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1722

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